BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1709.p
         (296 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096445|ref|YP_001101520.1| peptide ABC transporter [Hermin...   146   2e-36
gi|134095502|ref|YP_001100577.1| oligopeptide ABC transporter me...   116   2e-27

>gi|134096445|ref|YP_001101520.1| peptide ABC transporter
           [Herminiimonas arsenicoxydans]
          Length = 297

 Score =  146 bits (368), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 103/289 (35%), Positives = 173/289 (59%), Gaps = 20/289 (6%)

Query: 24  LRRFSRN----RLALIGAVIITVLVLLALAAPVLARYDPIFDQDYGNLLS---GPSAE-- 74
            RRF+RN    ++A  G+V++ ++VL A+ APV+A  +P +D    +++     P A+  
Sbjct: 10  FRRFARNFFASKIAAGGSVLLLLIVLAAIFAPVIAPQNP-YDLTQIDIMDSRLAPGAQNL 68

Query: 75  -----HWLGTDDLGRDIYSRMLYGSRISLQAALISVGLAFSLGVPIGILSGYYRGAVDAI 129
                + LGTD+ GRD+ S +LYG RIS+   + S  +A  +G+ +G+ +GY+ G  +  
Sbjct: 69  DGSFTYLLGTDEQGRDMLSAILYGVRISIIVGVASTAIALLIGLTLGLCAGYFGGRTEGF 128

Query: 130 VMRVVDALQAFPSLILALALAAALGGGFYNAMVAVGIGFTSSFVRLARGQAMTIRNLDYV 189
           +MRV D   +FP +++AL L A +G G    ++A+     + + R AR  A+  R  +Y+
Sbjct: 129 IMRVADIQLSFPPILVALILLALMGPGIDKIVIALIAVQWAYYARTARSAALVERKKEYM 188

Query: 190 MAARSIGAGHLRIMWRYILPNSLAPLVIQATFAMGTAIIAEAGLSYLGLGAKPEDPSWGS 249
            AAR +G   LRI++R++LPN L PL++ A   + +AI  EA LS+LGLG    +PS G 
Sbjct: 189 EAARGLGLSPLRIVFRHLLPNCLPPLIVIAALQVASAISLEATLSFLGLGLPVTEPSLG- 247

Query: 250 MLHIAQGY---LNSTPMLAMWPGLAIFLVVLGFNLLGDGIREVFDPKLS 295
            L IA G+   ++    ++++PG+A+ L V+  NL+ D +R+V +P+L 
Sbjct: 248 -LLIANGFDYMMSGKYWISVFPGIALLLTVVSINLVADQLRDVLNPRLQ 295


>gi|134095502|ref|YP_001100577.1| oligopeptide ABC transporter
           membrane protein [Herminiimonas arsenicoxydans]
          Length = 354

 Score =  116 bits (290), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/228 (35%), Positives = 120/228 (52%), Gaps = 15/228 (6%)

Query: 71  PSAEHWLGTDDLGRDIYSRMLYGSRISLQAALISVGLAFS---LGVPIGILSGYYRGAVD 127
           PSAE+WLGTDD GRD+ +R+LYG R+S+   L  + L F+   LG+  G + GY+ G  D
Sbjct: 130 PSAENWLGTDDRGRDVVARLLYGFRVSV---LFGLALTFTGVLLGLLTGAIQGYFAGKTD 186

Query: 128 AIVMRVVDALQAFPSLILALALAAALGGGFYNAMVAVGIGFTSSFVRLARGQAMTIRNLD 187
               R ++   + P L L +  A+         ++ + +          R   +  RNL+
Sbjct: 187 LFFQRFMEIWGSMPELYLLIIFASIFQPSIGLLLILLSLFGWMGLSDYVRADFLRNRNLE 246

Query: 188 YVMAARSIGAGHLRIMWRYILPNSLAPLVIQATFAMGTAIIAEAGLSYLGLGAKPEDPSW 247
           YV AAR++G  + +I+WR+ILPNSL P+V    F M  AI+A   L +LGLG      S 
Sbjct: 247 YVQAARALGLSNAQIIWRHILPNSLTPVVTFLPFRMSGAILALTSLDFLGLGVPASTASL 306

Query: 248 GSMLHIAQGYLNSTPMLAMWPGLAIFLVVLGFNL----LGDGIREVFD 291
           G +L  AQG  N   + A W  L+ F+V+    L    +GD +R   D
Sbjct: 307 GELL--AQGKNN---LDAWWIALSTFVVLTVMLLLLTNIGDALRNSLD 349


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.326    0.141    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 530,215
Number of extensions: 19780
Number of successful extensions: 99
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 2
Length of query: 296
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 215
Effective length of database: 733,452
Effective search space: 157692180
Effective search space used: 157692180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 128 (53.9 bits)