BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1708.p (319 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096444|ref|YP_001101519.1| oligopeptide ABC transporter AT... 254 3e-69 gi|134095501|ref|YP_001100576.1| oligopeptide ABC transporter AT... 230 7e-62 gi|134096443|ref|YP_001101518.1| oligopeptide ABC transporter AT... 205 2e-54 gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 113 1e-26 gi|134094055|ref|YP_001099130.1| ABC transporter ATP-binding pro... 112 3e-26 >gi|134096444|ref|YP_001101519.1| oligopeptide ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 321 Score = 254 bits (650), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 136/315 (43%), Positives = 196/315 (62%), Gaps = 4/315 (1%) Query: 4 IENLKIEFMSHGRRVAPVDGVSFSLGQDETVGLLGESGCGKSVTALSILRLFPMASQARL 63 ++NL++ F + V V+ VSFS+ + +GL+GESG GKS+TA SI+ L + + Sbjct: 1 MQNLQMHFTAREGVVKAVEDVSFSVAPGQIMGLVGESGSGKSMTAYSIMGLIDAPGKI-V 59 Query: 64 SGSIRFGERELLQADDATLRRIRGKEIAMIFQEPMTSLNPLHRIGEQLSEMLRIHTALPR 123 +G I +++L +RRIRG IAMIFQ+PM +LNP+ RI Q+ E + H + + Sbjct: 60 AGKILLKDQDLRALSPEAMRRIRGNRIAMIFQDPMMTLNPVLRIDTQMMEAVLAHQDVGK 119 Query: 124 QEIDAKVIAMLERVGLSRAAQLVDEYPHSLSGGMRQRVMIAMALLCQPRLLVCDEPTTAL 183 A L RVG++ + + YPH SGGMRQRV IA+ALL +P L++CDEPTTAL Sbjct: 120 ATARAMARDALVRVGIASPDERLLAYPHQFSGGMRQRVAIAIALLNKPDLIICDEPTTAL 179 Query: 184 DVTIQAQILDLMRDLKREQQTSILMITHDLGVVAEMCQRVVVMYAGQVVEQSSVEDLFDR 243 DVTIQ QIL M+ L RE T+++ ITHDL V+A + V VMYAG++VE SV+++ ++ Sbjct: 180 DVTIQGQILYEMQKLCRESGTALIWITHDLSVIAGLADAVCVMYAGKIVESGSVQEVLEQ 239 Query: 244 PAHPYTHALMRARPALDATPGVPLTAIPGSVPPPGTITQGCRFAARCARAQDICRQEMPT 303 P HPYTH L+ + P+ + PG+PL IPG P + GC F RC RA +C P Sbjct: 240 PQHPYTHGLIASSPSRN-LPGLPLRQIPGMTPSLLNLPSGCAFRTRCERATAVCENTPPL 298 Query: 304 LENLGDGHSVRCWYP 318 ++ ++RC++P Sbjct: 299 --SIDGARTLRCFHP 311 >gi|134095501|ref|YP_001100576.1| oligopeptide ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 534 Score = 230 bits (587), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 122/257 (47%), Positives = 169/257 (65%), Gaps = 7/257 (2%) Query: 1 MLTIENLKIEFMSHGRRVAPVDGVSFSLGQDETVGLLGESGCGKSVTALSILRLFPMASQ 60 +L I+NL++ F + V+ VSFS+ E L+GESG GK+VTALSILRL A+ Sbjct: 3 LLEIQNLQVSFDTS----KVVNDVSFSIAAGEKFALVGESGSGKTVTALSILRLNQDAAY 58 Query: 61 ARLSGSIRFGERELLQADDATLRRIRGKEIAMIFQEPMTSLNPLHRIGEQLSEMLRIHTA 120 A G I F +++LQ +A +R +RGK++AMIFQEPMT+LNPL IG Q++E L +H Sbjct: 59 A---GRILFEGQDILQRSEAAMRAVRGKDVAMIFQEPMTALNPLFTIGNQIAEGLMLHEG 115 Query: 121 LPRQEIDAKVIAMLERVGLSRAAQLVDEYPHSLSGGMRQRVMIAMALLCQPRLLVCDEPT 180 L + + I +L++ G+ + YPH LSGG RQR MIAMAL C+P+LL+ DEPT Sbjct: 116 LSARIAALRAIELLDKTGIPEPQRRALSYPHQLSGGQRQRAMIAMALACKPKLLIADEPT 175 Query: 181 TALDVTIQAQILDLMRDLKREQQTSILMITHDLGVVAEMCQRVVVMYAGQVVEQSSVEDL 240 TALDVTIQ QI++L+ L+RE+ ++LMITHDL +V RV VM G +VE ++ +L Sbjct: 176 TALDVTIQVQIVELLNQLQREENMAVLMITHDLNLVRHFADRVGVMEKGCLVEVAATREL 235 Query: 241 FDRPAHPYTHALMRARP 257 F P YT L+ ++P Sbjct: 236 FTAPRETYTRKLLASQP 252 Score = 135 bits (339), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 90/236 (38%), Positives = 138/236 (58%), Gaps = 8/236 (3%) Query: 21 VDGVSFSLGQDETVGLLGESGCGKSVTALSILRLFPMASQARLSGSIRFGERELLQADDA 80 VD VS + ET+G++GESG GK+ L++LRL S AR+SG+I F + L Sbjct: 291 VDDVSVQVRPGETLGIVGESGSGKTTLGLALLRL----SSARVSGTIAFDGKPLNAMQSD 346 Query: 81 TLRRIRGKEIAMIFQEPMTSLNPLHRIGEQLSEMLRIHT-ALPRQEIDAKVIAMLERVGL 139 LR +R + + ++FQ+P SL+P I + + E L +H L I V L VGL Sbjct: 347 ALRPLRAR-MQIVFQDPFASLSPRRTIEQIVGEGLALHQPQLGAAGIRKAVADALLEVGL 405 Query: 140 SRAAQLVDEYPHSLSGGMRQRVMIAMALLCQPRLLVCDEPTTALDVTIQAQILDLMRDLK 199 ++ YPH SGG RQR+ IA L+ +P L++ DEPT++LDV++Q Q+L L+ +L+ Sbjct: 406 P--PDIMARYPHEFSGGQRQRIAIARVLVLKPDLVLLDEPTSSLDVSVQQQVLQLLLELQ 463 Query: 200 REQQTSILMITHDLGVVAEMCQRVVVMYAGQVVEQSSVEDLFDRPAHPYTHALMRA 255 ++ + + + I+HDL V+ M RV+VM G+VVE + + +P YT L+ A Sbjct: 464 KKYELAYIFISHDLAVIRAMAHRVMVMKDGKVVESGMTQAVLSQPTEAYTQRLLAA 519 >gi|134096443|ref|YP_001101518.1| oligopeptide ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 336 Score = 205 bits (522), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 120/298 (40%), Positives = 161/298 (54%), Gaps = 9/298 (3%) Query: 18 VAPVDGVSFSLGQDETVGLLGESGCGKSVTALSILRLFPMASQARLSGSIRFGERELLQA 77 V VD V+ ++ E VGL+GESGCGKS + L ++S +RL + L+ Sbjct: 41 VHAVDQVTLTIHAGEVVGLVGESGCGKSTLGRMAVGLHTLSSGSRLWKGVN------LEV 94 Query: 78 DDATLRRIRGKEIAMIFQEPMTSLNPLHRIGEQLSEMLRIHTALPRQEIDAKVIAMLERV 137 A RR + + MIFQ+P SLNP RI + + E H +P E V +L+ V Sbjct: 95 SSAAERRQQQLGMQMIFQDPYASLNPRMRIQDVIGEAPVAHGMVPASEQTEYVARLLQTV 154 Query: 138 GLSRAAQLVDEYPHSLSGGMRQRVMIAMALLCQPRLLVCDEPTTALDVTIQAQILDLMRD 197 GL A L +PH SGG R R+ IA AL +P LLVCDE ALDV+IQAQ+L+L Sbjct: 155 GLDPA--LARRFPHQFSGGQRARIGIARALAVKPELLVCDEAVAALDVSIQAQVLNLFIK 212 Query: 198 LKREQQTSILMITHDLGVVAEMCQRVVVMYAGQVVEQSSVEDLFDRPAHPYTHALMRARP 257 L+ E + L I+HDLGVV + RV++MY G++VE S +LF RP HPYT AL+ + P Sbjct: 213 LRDELNLTYLFISHDLGVVRHVSDRVLIMYLGRIVESSPTAELFARPNHPYTVALLASAP 272 Query: 258 ALDATPGVPLTAIPGSVPPPGTITQGCRFAARCARAQDICRQEMPTLENLGDGHSVRC 315 L+ + A+ G +P P GC F RC A C E P L+ + H C Sbjct: 273 RLEVK-KIDFYAVKGEIPSPLHPPSGCHFHPRCPHAMPRCSVEQPLLKEIAPAHFSAC 329 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 113 bits (283), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/255 (30%), Positives = 130/255 (50%), Gaps = 23/255 (9%) Query: 2 LTIENLKIEFMSHGRRVAPVDGVSFSLGQDETVGLLGESGCGKSVTALSILRLFPMASQA 61 + ++N+ +F G VA ++ VS E LLG SGCGK+ ++LR+ Q Sbjct: 3 IEVKNINKKF---GNFVA-LNDVSLEFPAGELTALLGPSGCGKT----TLLRIIAGLEQP 54 Query: 62 RLSGSIRFGERELLQADDATLRRIRGKEIAMIFQEPMTSLNPLHRIGEQLSEMLRIHTAL 121 G + LL +DA+ R +R +++ +FQ +L + E ++ LR+ A Sbjct: 55 D-HGQV------LLDGEDASARHVRERQVGFVFQH--YALFKHMTVFENIAFGLRVRPAA 105 Query: 122 PRQE---IDAKVIAMLERVGLSRAAQLVDEYPHSLSGGMRQRVMIAMALLCQPRLLVCDE 178 R I KV +LE V L L D YP LSGG RQR+ +A AL +PR+L+ DE Sbjct: 106 TRPSESVIKEKVTKLLELVQLD---WLADRYPPQLSGGQRQRIALARALAVEPRVLLLDE 162 Query: 179 PTTALDVTIQAQILDLMRDLKREQQTSILMITHDLGVVAEMCQRVVVMYAGQVVEQSSVE 238 P ALD ++ ++ +R L E + + +THD E+ ++V+M G V + + + Sbjct: 163 PFGALDAKVRKELRRWLRRLHDELHVTSIFVTHDQEEALEVADQIVLMNKGHVEQIGAPK 222 Query: 239 DLFDRPAHPYTHALM 253 D+++ PA P+ + + Sbjct: 223 DVYNNPASPFVYGFL 237 >gi|134094055|ref|YP_001099130.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 376 Score = 112 bits (280), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 77/247 (31%), Positives = 134/247 (54%), Gaps = 15/247 (6%) Query: 2 LTIENLKIEFMSHGRRVAPVDGVSFSLGQDETVGLLGESGCGKSVTALSILRLFPMASQA 61 L++E++++ + + V +SF+L + + LLG+SGCGK+ +I P+ Sbjct: 15 LSLESIRVGYRLGQQMHEIVHSLSFALQRGQIGCLLGQSGCGKTTVLRAIAGFEPLTE-- 72 Query: 62 RLSGSIRFGERELLQADDATLRRIRGKEIAMIFQEPMTSLNPLHRIGEQLSEMLRIHTAL 121 GSI G +E+ A R +I ++FQ+ +L P + + + LR A Sbjct: 73 ---GSITLGGKEISNAHFTATPETR--QIGVVFQD--YALFPHLSVADNVGFGLRKLAAP 125 Query: 122 PRQEIDAKVIAMLERVGLSRAAQLVDEYPHSLSGGMRQRVMIAMALLCQPRLLVCDEPTT 181 RQ A++ A+L VGL+ + ++PH LSGG +QRV +A AL QP LL+ DEP + Sbjct: 126 ERQ---ARIAALLTLVGLASQGK---KFPHELSGGQQQRVALARALAPQPDLLLLDEPFS 179 Query: 182 ALDVTIQAQILDLMRDLKREQQTSILMITHDLGVVAEMCQRVVVMYAGQVVEQSSVEDLF 241 LDV ++ ++ +RD+ +E T+ +++THD + ++ VM G +V+ S +L+ Sbjct: 180 NLDVDLRERLASEVRDILKEVGTTAVLVTHDQHEAFAIADQIGVMQDGVIVQWDSAYNLY 239 Query: 242 DRPAHPY 248 RPA+ + Sbjct: 240 HRPANRF 246 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.323 0.136 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 575,507 Number of extensions: 22039 Number of successful extensions: 198 Number of sequences better than 1.0e-08: 41 Number of HSP's gapped: 155 Number of HSP's successfully gapped: 43 Length of query: 319 Length of database: 1,000,347 Length adjustment: 82 Effective length of query: 237 Effective length of database: 730,157 Effective search space: 173047209 Effective search space used: 173047209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 129 (54.3 bits)