BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1707.p (326 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096443|ref|YP_001101518.1| oligopeptide ABC transporter AT... 306 8e-85 gi|134096444|ref|YP_001101519.1| oligopeptide ABC transporter AT... 211 3e-56 gi|134095501|ref|YP_001100576.1| oligopeptide ABC transporter AT... 196 1e-51 gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC trans... 153 1e-38 gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 124 9e-30 >gi|134096443|ref|YP_001101518.1| oligopeptide ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 336 Score = 306 bits (784), Expect = 8e-85, Method: Compositional matrix adjust. Identities = 157/316 (49%), Positives = 209/316 (66%), Gaps = 5/316 (1%) Query: 1 MTTLPPLLDVHGLKKHFAAGGSTVKAVDDVSFSIAQGQTLGLVGESGCGKSTTGRSVLRL 60 + T + ++ G KK V AVD V+ +I G+ +GLVGESGCGKST GR + L Sbjct: 22 LDTAARIANLFGAKK----SAEVVHAVDQVTLTIHAGEVVGLVGESGCGKSTLGRMAVGL 77 Query: 61 IEPSEGSVRFMGQELTLLPESQLRAMRRHMQMVFQDPYASLNPRMTIGEVLEEPLIVHKL 120 S GS + G L + ++ R + MQM+FQDPYASLNPRM I +V+ E + H + Sbjct: 78 HTLSSGSRLWKGVNLEVSSAAERRQQQLGMQMIFQDPYASLNPRMRIQDVIGEAPVAHGM 137 Query: 121 HDRATRKRKVAEALEMVGLNPAYAARHPHEFSGGQRQRVGIARAIITRPKLVVADEAVSA 180 + + VA L+ VGL+PA A R PH+FSGGQR R+GIARA+ +P+L+V DEAV+A Sbjct: 138 VPASEQTEYVARLLQTVGLDPALARRFPHQFSGGQRARIGIARALAVKPELLVCDEAVAA 197 Query: 181 LDVSIQAQILNLLRELQQELGLTYLFVSHDLAVIRHVSDHIGVMYLGRMVELGTCEEVYS 240 LDVSIQAQ+LNL +L+ EL LTYLF+SHDL V+RHVSD + +MYLGR+VE E+++ Sbjct: 198 LDVSIQAQVLNLFIKLRDELNLTYLFISHDLGVVRHVSDRVLIMYLGRIVESSPTAELFA 257 Query: 241 NPRHPYTQALLSAIPREHPRQKRERIVLQGSIPNPAAPPTGCHFHPRCPSCMEICKTEAP 300 P HPYT ALL++ PR + K + ++G IP+P PP+GCHFHPRCP M C E P Sbjct: 258 RPNHPYTVALLASAPRLEVK-KIDFYAVKGEIPSPLHPPSGCHFHPRCPHAMPRCSVEQP 316 Query: 301 PAIKISPTHTVACHLS 316 +I+P H ACHL+ Sbjct: 317 LLKEIAPAHFSACHLN 332 >gi|134096444|ref|YP_001101519.1| oligopeptide ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 321 Score = 211 bits (538), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 123/312 (39%), Positives = 182/312 (58%), Gaps = 12/312 (3%) Query: 10 VHGLKKHFAAGGSTVKAVDDVSFSIAQGQTLGLVGESGCGKSTTGRSVLRLIE-PSE--- 65 + L+ HF A VKAV+DVSFS+A GQ +GLVGESG GKS T S++ LI+ P + Sbjct: 1 MQNLQMHFTAREGVVKAVEDVSFSVAPGQIMGLVGESGSGKSMTAYSIMGLIDAPGKIVA 60 Query: 66 GSVRFMGQEL-TLLPESQLRAMRRHMQMVFQDPYASLNPRMTIGEVLEEPLIVHKLHDRA 124 G + Q+L L PE+ R + M+FQDP +LNP + I + E ++ H+ +A Sbjct: 61 GKILLKDQDLRALSPEAMRRIRGNRIAMIFQDPMMTLNPVLRIDTQMMEAVLAHQDVGKA 120 Query: 125 TRKRKVAEALEMVGLNP--AYAARHPHEFSGGQRQRVGIARAIITRPKLVVADEAVSALD 182 T + +AL VG+ +PH+FSGG RQRV IA A++ +P L++ DE +ALD Sbjct: 121 TARAMARDALVRVGIASPDERLLAYPHQFSGGMRQRVAIAIALLNKPDLIICDEPTTALD 180 Query: 183 VSIQAQILNLLRELQQELGLTYLFVSHDLAVIRHVSDHIGVMYLGRMVELGTCEEVYSNP 242 V+IQ QIL +++L +E G ++++HDL+VI ++D + VMY G++VE G+ +EV P Sbjct: 181 VTIQGQILYEMQKLCRESGTALIWITHDLSVIAGLADAVCVMYAGKIVESGSVQEVLEQP 240 Query: 243 RHPYTQALLSAIP-REHPRQKRERIVLQGSIPNPAAPPTGCHFHPRCPSCMEICKTEAPP 301 +HPYT L+++ P R P +I G P+ P+GC F RC +C E P Sbjct: 241 QHPYTHGLIASSPSRNLPGLPLRQI--PGMTPSLLNLPSGCAFRTRCERATAVC--ENTP 296 Query: 302 AIKISPTHTVAC 313 + I T+ C Sbjct: 297 PLSIDGARTLRC 308 >gi|134095501|ref|YP_001100576.1| oligopeptide ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 534 Score = 196 bits (499), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 117/230 (50%), Positives = 157/230 (68%), Gaps = 2/230 (0%) Query: 26 AVDDVSFSIAQGQTLGLVGESGCGKSTTGRSVLRLIEPS-EGSVRFMGQELTLLPESQLR 84 AVDDVS + G+TLG+VGESG GK+T G ++LRL G++ F G+ L + LR Sbjct: 290 AVDDVSVQVRPGETLGIVGESGSGKTTLGLALLRLSSARVSGTIAFDGKPLNAMQSDALR 349 Query: 85 AMRRHMQMVFQDPYASLNPRMTIGEVLEEPLIVHKLHDRATRKRK-VAEALEMVGLNPAY 143 +R MQ+VFQDP+ASL+PR TI +++ E L +H+ A RK VA+AL VGL P Sbjct: 350 PLRARMQIVFQDPFASLSPRRTIEQIVGEGLALHQPQLGAAGIRKAVADALLEVGLPPDI 409 Query: 144 AARHPHEFSGGQRQRVGIARAIITRPKLVVADEAVSALDVSIQAQILNLLRELQQELGLT 203 AR+PHEFSGGQRQR+ IAR ++ +P LV+ DE S+LDVS+Q Q+L LL ELQ++ L Sbjct: 410 MARYPHEFSGGQRQRIAIARVLVLKPDLVLLDEPTSSLDVSVQQQVLQLLLELQKKYELA 469 Query: 204 YLFVSHDLAVIRHVSDHIGVMYLGRMVELGTCEEVYSNPRHPYTQALLSA 253 Y+F+SHDLAVIR ++ + VM G++VE G + V S P YTQ LL+A Sbjct: 470 YIFISHDLAVIRAMAHRVMVMKDGKVVESGMTQAVLSQPTEAYTQRLLAA 519 Score = 195 bits (496), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 114/284 (40%), Positives = 172/284 (60%), Gaps = 16/284 (5%) Query: 7 LLDVHGLKKHFAAGGSTVKAVDDVSFSIAQGQTLGLVGESGCGKSTTGRSVLRLIEPSE- 65 LL++ L+ F T K V+DVSFSIA G+ LVGESG GK+ T S+LRL + + Sbjct: 3 LLEIQNLQVSF----DTSKVVNDVSFSIAAGEKFALVGESGSGKTVTALSILRLNQDAAY 58 Query: 66 -GSVRFMGQELTLLPESQLRAMR-RHMQMVFQDPYASLNPRMTIGEVLEEPLIVHK-LHD 122 G + F GQ++ E+ +RA+R + + M+FQ+P +LNP TIG + E L++H+ L Sbjct: 59 AGRILFEGQDILQRSEAAMRAVRGKDVAMIFQEPMTALNPLFTIGNQIAEGLMLHEGLSA 118 Query: 123 RATRKRKVAEALEMVGL-NPAY-AARHPHEFSGGQRQRVGIARAIITRPKLVVADEAVSA 180 R R + E L+ G+ P A +PH+ SGGQRQR IA A+ +PKL++ADE +A Sbjct: 119 RIAALRAI-ELLDKTGIPEPQRRALSYPHQLSGGQRQRAMIAMALACKPKLLIADEPTTA 177 Query: 181 LDVSIQAQILNLLRELQQELGLTYLFVSHDLAVIRHVSDHIGVMYLGRMVELGTCEEVYS 240 LDV+IQ QI+ LL +LQ+E + L ++HDL ++RH +D +GVM G +VE+ E+++ Sbjct: 178 LDVTIQVQIVELLNQLQREENMAVLMITHDLNLVRHFADRVGVMEKGCLVEVAATRELFT 237 Query: 241 NPRHPYTQALLSAIPREHPRQKRERIVLQGSIPNPAAPPTGCHF 284 PR YT+ LL++ P++ E ++P +A C F Sbjct: 238 APRETYTRKLLASQPQQLVNTLNE-----SAVPLLSAEHVRCTF 276 >gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC transporter ATP-binding subunit [Herminiimonas arsenicoxydans] Length = 366 Score = 153 bits (386), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 101/246 (41%), Positives = 146/246 (59%), Gaps = 13/246 (5%) Query: 7 LLDVHGLKKHFAAGGSTVKAVDDVSFSIAQGQTLGLVGESGCGKSTTGRSVLRLIEPSEG 66 LL++ L + F G +TV VD++S SI G+ L+G SGCGK+T R + EP G Sbjct: 3 LLEIRNLTRRF--GDNTV--VDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDEPDAG 58 Query: 67 SVRFMGQELTLLPESQLRAMRRHMQMVFQDPYASLNPRMTIGEVLEEPLIVHKLHDRATR 126 + G +LT +P Q R ++ VFQ+ YA L P MT+ + PL + ++ Sbjct: 59 KILLDGVDLTGVPPEQ-----RVVRTVFQN-YA-LFPHMTVAGNIAFPLEMAN-TPKSEI 110 Query: 127 KRKVAEALEMVGLNPAYAARHPHEFSGGQRQRVGIARAIITRPKLVVADEAVSALDVSIQ 186 K+KV EALE V L +AAR+PHE SGGQRQRV IARA++TRPKL++ DE +SALD ++ Sbjct: 111 KQKVDEALEDVRLT-GFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLR 169 Query: 187 AQILNLLRELQQELGLTYLFVSHDLAVIRHVSDHIGVMYLGRMVELGTCEEVYSNPRHPY 246 Q+ L LQ+E+G+T+++V+HD A +S I VM G + +L +YS PR + Sbjct: 170 EQMQIELINLQKEVGITFVYVTHDQAEALALSHRIAVMNKGNIEQLDEPTRIYSYPRSRF 229 Query: 247 TQALLS 252 + Sbjct: 230 VADFIG 235 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 124 bits (310), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 84/250 (33%), Positives = 132/250 (52%), Gaps = 15/250 (6%) Query: 8 LDVHGLKKHFAAGGSTVKAVDDVSFSIAQGQTLGLVGESGCGKSTTGRSVLRLIEPSEGS 67 ++V + K F G+ V A++DVS G+ L+G SGCGK+T R + L +P G Sbjct: 3 IEVKNINKKF---GNFV-ALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQ 58 Query: 68 VRFMGQELTLLPESQLRAMRRHMQMVFQDPYASLNPRMTIGEVLEEPLIVHKLHDRATR- 126 V G++ S R + VFQ + +L MT+ E + L V R + Sbjct: 59 VLLDGED-----ASARHVRERQVGFVFQ--HYALFKHMTVFENIAFGLRVRPAATRPSES 111 Query: 127 --KRKVAEALEMVGLNPAYAARHPHEFSGGQRQRVGIARAIITRPKLVVADEAVSALDVS 184 K KV + LE+V L+ A R+P + SGGQRQR+ +ARA+ P++++ DE ALD Sbjct: 112 VIKEKVTKLLELVQLD-WLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAK 170 Query: 185 IQAQILNLLRELQQELGLTYLFVSHDLAVIRHVSDHIGVMYLGRMVELGTCEEVYSNPRH 244 ++ ++ LR L EL +T +FV+HD V+D I +M G + ++G ++VY+NP Sbjct: 171 VRKELRRWLRRLHDELHVTSIFVTHDQEEALEVADQIVLMNKGHVEQIGAPKDVYNNPAS 230 Query: 245 PYTQALLSAI 254 P+ L + Sbjct: 231 PFVYGFLGNV 240 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.135 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 623,532 Number of extensions: 25026 Number of successful extensions: 217 Number of sequences better than 1.0e-08: 45 Number of HSP's gapped: 166 Number of HSP's successfully gapped: 47 Length of query: 326 Length of database: 1,000,347 Length adjustment: 82 Effective length of query: 244 Effective length of database: 730,157 Effective search space: 178158308 Effective search space used: 178158308 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)