BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1705.p
         (239 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094688|ref|YP_001099763.1| GntR family transcriptional reg...    82   3e-17
gi|134094411|ref|YP_001099486.1| GntR family transcriptional reg...    59   2e-10
gi|134093377|ref|YP_001098452.1| GntR family transcriptional reg...    55   2e-09

>gi|134094688|ref|YP_001099763.1| GntR family transcriptional
           regulator [Herminiimonas arsenicoxydans]
          Length = 220

 Score = 82.0 bits (201), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/196 (32%), Positives = 100/196 (51%), Gaps = 14/196 (7%)

Query: 15  LRQDIFDM----RLLPGDQITETEIAAYFKVSRTPVRQALQRLQNDGLMQGYVRGGWEVV 70
           LR+ I +M    +L PG  + ETE+A  F VSRTP+R+AL +L + G++    R G  V 
Sbjct: 8   LREAIEEMIAVGKLPPGHHLDETELAKEFGVSRTPIREALIQLASMGIIVIRPRRGAIVA 67

Query: 71  PIDFKRFADLYEMRKLIETH----AVRRLCTSGSDQSVLADLRATWCLPAEAREP-DGPK 125
            I  ++  +++E+   +E      A RR+  +G      A L+AT     EAR+  D   
Sbjct: 68  EIGPQQLIEMFEVMAELEAMCARLAARRMSPAGH-----ATLKATHLACEEARDSADSDA 122

Query: 126 AAQLDEIFHQTLVRAAGNQEMAETFDRLTDRIRIVRRLDFLYGDCLHSTYEEHAAILDCI 185
               +E FHQ +   + N  + E    L  R+R  RRL     + + ++++EH A++D I
Sbjct: 123 YFYKNEEFHQQIYIGSQNSFLEEQARVLQRRLRPYRRLQLRVRNRVQASFDEHGAVVDAI 182

Query: 186 AAGDAESAIRLMGEHI 201
             G  E A  L+ +HI
Sbjct: 183 IEGKGELAAELLRQHI 198


>gi|134094411|ref|YP_001099486.1| GntR family transcriptional
           regulator [Herminiimonas arsenicoxydans]
          Length = 248

 Score = 58.9 bits (141), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 55/101 (54%), Gaps = 4/101 (3%)

Query: 7   LPEYVYAQLRQDIFDMRLLPGDQITETEIAAYFKVSRTPVRQALQRLQNDGLMQGYVRGG 66
           L +  Y QL + I  +R+ PG  I+E  ++  F + RTP+R+A+QRL  + L+    + G
Sbjct: 39  LTDLAYEQLEEAIITLRIPPGSVISELTLSEMFNIGRTPIREAIQRLAREHLLLVLPQRG 98

Query: 67  WEVVPIDFKRFADLYEMRKLIETHAVRRLCTSGSDQSVLAD 107
             V  +D K+   L E R+ +E    R +C S + ++  A+
Sbjct: 99  VMVPEVDLKKQLKLLETRREVE----RLICKSAARRATPAE 135


>gi|134093377|ref|YP_001098452.1| GntR family transcriptional
           regulator [Herminiimonas arsenicoxydans]
          Length = 249

 Score = 55.5 bits (132), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 92/204 (45%), Gaps = 18/204 (8%)

Query: 6   SLPEYVYAQLRQDIFDMRLLPGDQITETEIAAYFKVSRTPVRQALQRLQNDGLMQGYVRG 65
            L +  Y Q+ + I  +R+ PG  ++E  ++    + RTP+R+A+QRL  + L+    + 
Sbjct: 39  KLTDIAYEQIEEAIITLRIPPGSVVSELTLSEMLNIGRTPIREAIQRLAREHLLLVLPQR 98

Query: 66  GWEVVPIDFKRFADLYEMRKLIETHAVRRLCTSGSDQSVLADLRATWCLPAE----AREP 121
           G  +  ID K+   L E R+ +E    R +C S + ++   +  A   L  E    +   
Sbjct: 99  GLLIPEIDLKKQLKLLETRREVE----RLICKSAARRATEEERAAFARLHDEFMHASSTN 154

Query: 122 DGPKAAQLDEIFHQTLVRAAGNQEMAETFDRLTDRIRIVRRL-DFLYGDC--LHSTYEEH 178
           D     + D  F++  + AA N E AE   RL   +   RR   F Y     L      H
Sbjct: 155 DDVSFMRSDREFNELALIAARN-EFAEGAMRLMHGLS--RRFWYFHYKQTADLPEMARLH 211

Query: 179 AAILDCIAAGDAESAIRLMGEHID 202
           A +   IA GD    ++L GE +D
Sbjct: 212 ATVAGAIAKGD----VKLAGEGLD 231


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.136    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 447,163
Number of extensions: 17453
Number of successful extensions: 56
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 4
Length of query: 239
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 160
Effective length of database: 740,042
Effective search space: 118406720
Effective search space used: 118406720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 127 (53.5 bits)