BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1704.p
         (297 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093624|ref|YP_001098699.1| 2-dehydropantoate 2-reductase [...   112   2e-26

>gi|134093624|ref|YP_001098699.1| 2-dehydropantoate 2-reductase
           [Herminiimonas arsenicoxydans]
          Length = 336

 Score =  112 bits (280), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/323 (29%), Positives = 153/323 (47%), Gaps = 35/323 (10%)

Query: 1   MKVAVMGAGAVGCYFAGMLARAGHEVVLVGRPLHVEAFNTKGLRLEAKTFDDTIA--VQA 58
           MK+AV+GAGA+G Y    LA AG +V  + R  ++EA    G +L      + +A  V+A
Sbjct: 1   MKIAVIGAGAIGGYVGVKLALAGEDVTFIVRGANLEAIRKNGAKLIMHDGSEHVASNVKA 60

Query: 59  STDPAIVAGADLVLFCVKSPDTETAGAQLRPHLAPDTLVLTLQNG--------------- 103
           + +       D+++  +K+   E     L   + P+T+++T+QNG               
Sbjct: 61  TNNYDEAGHQDIIVLAMKAHQLEAIADDLPKLIGPETVIVTMQNGIPFWYFHKHGGKLAG 120

Query: 104 -----TDNADRLRTVIP-QPVAAAVVYVATEMAGPGHVKH-HGR----GELVIEPSARSQ 152
                 D   ++   IP   V   VVY A+E+  PG +KH  G     GEL    S R+ 
Sbjct: 121 TRVESVDPTGKITAKIPADRVLGCVVYPASELIAPGVIKHIEGDRFPIGELDGSISERAT 180

Query: 153 QAADALIAAGVPTEISDNVRGALWLKLIINCAYNALSAITQLPYGELVEGVGVLEVMNHL 212
           + ++    AG  + + +N+R  +WLKL  N  +N +SA++     ++ +     E+   +
Sbjct: 181 RVSECFTNAGFKSPVLENIRSEMWLKLWGNLTFNPISALSHSTLQDICQFPLSRELAAAM 240

Query: 213 VNECKAVAAAEGVTLTGDVEVAIRKII---ETMPTQFSSTAQDVARGKPSEIDHLNGFIV 269
           + E + VA   G+    +  V + K I   E +    +S  QDV  G+  EID L G +V
Sbjct: 241 MTEAQTVANKLGI----EFRVTLDKRIAGAEKVGKHKTSMLQDVEAGRDPEIDALVGSVV 296

Query: 270 RRGQAHGISTPVNLTVHALVKLI 292
             G+     TP   TV+ALVKL+
Sbjct: 297 ELGRLTETPTPHIDTVYALVKLL 319


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.133    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 520,791
Number of extensions: 19711
Number of successful extensions: 113
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 216
Effective length of database: 733,452
Effective search space: 158425632
Effective search space used: 158425632
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)