BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1701.p
         (314 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096445|ref|YP_001101520.1| peptide ABC transporter [Hermin...   149   2e-37
gi|134095502|ref|YP_001100577.1| oligopeptide ABC transporter me...   117   1e-27

>gi|134096445|ref|YP_001101520.1| peptide ABC transporter
           [Herminiimonas arsenicoxydans]
          Length = 297

 Score =  149 bits (376), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 98/292 (33%), Positives = 161/292 (55%), Gaps = 10/292 (3%)

Query: 33  IRTPWREFWRKFKKQRLAVYAGVFILLLIVIAIIAPWIVPFDAENFFDYD---------A 83
           I TP+R F R F   ++A    V +LL+++ AI AP I P +  +    D         A
Sbjct: 6   IETPFRRFARNFFASKIAAGGSVLLLLIVLAAIFAPVIAPQNPYDLTQIDIMDSRLAPGA 65

Query: 84  LNSPPTWTHWFGVDSLGRDIFSRILMGARISLASGFFSVAIGAVIGTVFGLLAGYYEGWW 143
            N   ++T+  G D  GRD+ S IL G RIS+  G  S AI  +IG   GL AGY+ G  
Sbjct: 66  QNLDGSFTYLLGTDEQGRDMLSAILYGVRISIIVGVASTAIALLIGLTLGLCAGYFGGRT 125

Query: 144 DRITMRICDVLFAFPGILLAIGIVAILGGGMINVIISVSVFSIPAFARLVRGNTLQLKNL 203
           +   MR+ D+  +FP IL+A+ ++A++G G+  ++I++       +AR  R   L  +  
Sbjct: 126 EGFIMRVADIQLSFPPILVALILLALMGPGIDKIVIALIAVQWAYYARTARSAALVERKK 185

Query: 204 TYIEATRSIGASDATIMWKHIFPGTISAIVVYFTMRIGTSIITAAGLSFLGLGAQSPTPE 263
            Y+EA R +G S   I+++H+ P  +  ++V   +++ ++I   A LSFLGLG     P 
Sbjct: 186 EYMEAARGLGLSPLRIVFRHLLPNCLPPLIVIAALQVASAISLEATLSFLGLGLPVTEPS 245

Query: 264 WGLMLNEARADMVTSPH-VALVPSIAIFLTVLAFNLLGDGLRDALDPKIDQR 314
            GL++      M++  + +++ P IA+ LTV++ NL+ D LRD L+P++  +
Sbjct: 246 LGLLIANGFDYMMSGKYWISVFPGIALLLTVVSINLVADQLRDVLNPRLQTQ 297


>gi|134095502|ref|YP_001100577.1| oligopeptide ABC transporter
           membrane protein [Herminiimonas arsenicoxydans]
          Length = 354

 Score =  117 bits (292), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/346 (24%), Positives = 160/346 (46%), Gaps = 60/346 (17%)

Query: 24  SAVIAAGQKIRTPWREFWRKFKKQRLAVYAGVFILLLIVIAIIAP--------------- 68
           S     G K  +P R  W +FKK R   ++ +   +L+ I+++A                
Sbjct: 7   STAAVPGAKSVSPGRRVWLRFKKNRRGYWSLIIFSILVAISLLAELVSNDKPLVARYNGE 66

Query: 69  WIVP-------------FDAE-----------------------NFFDYDALN------- 85
           W+ P             F+++                       N + +D LN       
Sbjct: 67  WVFPVFTTYSEKKFGGDFESQADYLDPFIQEQFRKDGNWAIYPLNRYHFDTLNYFATSPN 126

Query: 86  -SPPTWTHWFGVDSLGRDIFSRILMGARISLASGFFSVAIGAVIGTVFGLLAGYYEGWWD 144
            +PP+  +W G D  GRD+ +R+L G R+S+  G      G ++G + G + GY+ G  D
Sbjct: 127 PAPPSAENWLGTDDRGRDVVARLLYGFRVSVLFGLALTFTGVLLGLLTGAIQGYFAGKTD 186

Query: 145 RITMRICDVLFAFPGILLAIGIVAILGGGMINVIISVSVFSIPAFARLVRGNTLQLKNLT 204
               R  ++  + P + L I   +I    +  ++I +S+F     +  VR + L+ +NL 
Sbjct: 187 LFFQRFMEIWGSMPELYLLIIFASIFQPSIGLLLILLSLFGWMGLSDYVRADFLRNRNLE 246

Query: 205 YIEATRSIGASDATIMWKHIFPGTISAIVVYFTMRIGTSIITAAGLSFLGLGAQSPTPEW 264
           Y++A R++G S+A I+W+HI P +++ +V +   R+  +I+    L FLGLG  + T   
Sbjct: 247 YVQAARALGLSNAQIIWRHILPNSLTPVVTFLPFRMSGAILALTSLDFLGLGVPASTASL 306

Query: 265 GLMLNEARADMVTSPHVALVPSIAIFLTVLAFNLLGDGLRDALDPK 310
           G +L + + ++  +  +AL   + + + +L    +GD LR++LD +
Sbjct: 307 GELLAQGKNNL-DAWWIALSTFVVLTVMLLLLTNIGDALRNSLDVR 351


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.326    0.141    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 489,156
Number of extensions: 17256
Number of successful extensions: 106
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 2
Length of query: 314
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 232
Effective length of database: 730,157
Effective search space: 169396424
Effective search space used: 169396424
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 128 (53.9 bits)