BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1699.p
         (523 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096447|ref|YP_001101522.1| putative dipeptide transport bi...   139   5e-34

>gi|134096447|ref|YP_001101522.1| putative dipeptide transport
           binding transmembrane protein [Herminiimonas
           arsenicoxydans]
          Length = 528

 Score =  139 bits (349), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 120/469 (25%), Positives = 217/469 (46%), Gaps = 43/469 (9%)

Query: 29  AAHAFAAKSVTLAVYSTFTTMDPYDANDTLSLSMAKSFYQGLFGFDKDMKLIPVLAEGYL 88
           A+HA  A  + + + +  +++DP+  N   +++ +   +  L   D + KL+P LA  + 
Sbjct: 25  ASHAAFAADLKIGLSADVSSLDPHYLNIAPNVTFSSHIFDALVNVDANGKLVPGLATSWR 84

Query: 89  VSKDGLEYTIRLKQGVKFQDGTDFKADAVKAVFDR---VTNPDNKLKRYNLFNRIAKTEV 145
            + D   +  +L++ VKF DG+ F AD V    DR   +T+       Y    +I   ++
Sbjct: 85  -AVDATTWEFKLRRDVKFHDGSPFTADDVIFSLDRPAKLTSSPGPFTAYT--KQIVAKKI 141

Query: 146 LNDYTVKIVLKEPFSAFINVLAHPSAVMISPAALKQYGNKDIAFHP--VGTGPFKFVEWK 203
           ++ YTV+++   P+      L   +  ++S  A ++    D       +GTGP+KF+ +K
Sbjct: 142 VDPYTVRLMTAAPYGPL--ALDMSTVFIVSKKAAEKASTDDFNNGKALIGTGPYKFLSFK 199

Query: 204 QTDYVKVEKFDGYWKKGYPKVDEIIWKPVVDNNARSAMMQTGEAQFTYPLPYEQADLLKS 263
           + D ++V + D YW  G    D++ ++ + ++  R A + +G+      +P   ADL + 
Sbjct: 200 RGDRIEVTRNDQYWG-GKSDWDKVTFRIITNSAPRLAALLSGDVDAIEGVP--TADLSRL 256

Query: 264 KPNLDVISAPSIIQRYMSMNTKQKPF--------------DNP----KVREAINYAINKQ 305
           K N     A  I  R +     Q P               +NP    +VR+A++ AIN+Q
Sbjct: 257 KSNAKFSFAQKISWRTIFWELDQSPGASRYVTDKSGKPLPNNPLHDVRVRQAMSKAINRQ 316

Query: 306 ALVKVAFNGYATPMDGVVPQGV-DYAFKTGPWPYDPKKAKALLAEAGYPNGFETELWSAY 364
           ALV+    G A P   +V  G+  Y        YDP+ AK LLA+AGYP+GF   +    
Sbjct: 317 ALVERTMEGLAVPASNIVSPGIFGYNDALKVEVYDPEGAKKLLAQAGYPHGFALTIHGPN 376

Query: 365 -THSTAVKIIQFLQQQLAQVGIKAKIQALEAGQRVERVESWQDPATAPVRLLYIGWSSST 423
             +    +++Q + Q   ++GI+ K+  L       +  + +        +  +GW +  
Sbjct: 377 DRYINDEQVVQTVAQFWNRIGIQTKVATLPLSVYFAKARAGE------FSVSLLGWGTLA 430

Query: 424 GEADWALRPLLASESFPPRL--YNTAYYKNDKVDADIAKALTVTDRKDK 470
           G  D+ LR L+ + +       +N   Y N  VD  IA +L+  D+  +
Sbjct: 431 G--DFGLRTLVGTPNVETGWGSWNWGKYSNPAVDKLIASSLSSVDQGKR 477


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.132    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 985,573
Number of extensions: 40223
Number of successful extensions: 97
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 1,000,347
Length adjustment: 86
Effective length of query: 437
Effective length of database: 716,977
Effective search space: 313318949
Effective search space used: 313318949
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)