BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1698.p (617 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095501|ref|YP_001100576.1| oligopeptide ABC transporter AT... 422 e-119 gi|134096443|ref|YP_001101518.1| oligopeptide ABC transporter AT... 243 2e-65 gi|134096444|ref|YP_001101519.1| oligopeptide ABC transporter AT... 211 6e-56 gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC trans... 145 5e-36 gi|134094055|ref|YP_001099130.1| ABC transporter ATP-binding pro... 115 4e-27 >gi|134095501|ref|YP_001100576.1| oligopeptide ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 534 Score = 422 bits (1085), Expect = e-119, Method: Compositional matrix adjust. Identities = 255/563 (45%), Positives = 344/563 (61%), Gaps = 50/563 (8%) Query: 6 RVLDVSHLNVRFATSERTVDAVRDLSFHVDQGETLAIVGESGSGKSVSSLAIMRLIEHGG 65 +L++ +L V F TS+ V D+SF + GE A+VGESGSGK+V++L+I+RL + Sbjct: 2 NLLEIQNLQVSFDTSK----VVNDVSFSIAAGEKFALVGESGSGKTVTALSILRLNQDAA 57 Query: 66 GKIASGSLQFRRRSGQTLDLAQADNATMRSIRGAEIAMIFQEPMTSLNPVFTVGEQIAES 125 +G + F GQ D+ Q A MR++RG ++AMIFQEPMT+LNP+FT+G QIAE Sbjct: 58 ---YAGRILFE---GQ--DILQRSEAAMRAVRGKDVAMIFQEPMTALNPLFTIGNQIAEG 109 Query: 126 IRLHQGMSRAAAQAEALRMLEMVRIPEAKRVLGRHPHQLSGGMRQRVMIAMALSCKPSLL 185 + LH+G+S A A+ +L+ IPE +R +PHQLSGG RQR MIAMAL+CKP LL Sbjct: 110 LMLHEGLSARIAALRAIELLDKTGIPEPQRRALSYPHQLSGGQRQRAMIAMALACKPKLL 169 Query: 186 IADEPTTALDVTIQAQILQLIRSLQEEMQMGVIFITHDMGVVAEVADRVVVMCRGEKVEE 245 IADEPTTALDVTIQ QI++L+ LQ E M V+ ITHD+ +V ADRV VM +G VE Sbjct: 170 IADEPTTALDVTIQVQIVELLNQLQREENMAVLMITHDLNLVRHFADRVGVMEKGCLVEV 229 Query: 246 NDVQPLFAAPAHPYTQSLLAAVPRLGSMRGTDKPLRFGLAPQAEARPELIASELQAQAEI 305 + LF AP YT+ LLA ++P+ + + L A Sbjct: 230 AATRELFTAPRETYTRKLLA------------------------SQPQQLVNTLNESA-- 263 Query: 306 AAQRQPILKVRDLTTRFDVKSGIFGRVKQRVHAVEKVSFDLYSGETLAIVGESGCGKSTT 365 P+L + FD+K G F AV+ VS + GETL IVGESG GK+T Sbjct: 264 ----VPLLSAEHVRCTFDIKQGWFKTTP--FVAVDDVSVQVRPGETLGIVGESGSGKTTL 317 Query: 366 GRSLLRLVDI-AGGRVEFGGRDLAQLPRSELRQLRRDIQFIFQDPFASLDPRMTVGYSIM 424 G +LLRL G + F G+ L + LR LR +Q +FQDPFASL PR T+ + Sbjct: 318 GLALLRLSSARVSGTIAFDGKPLNAMQSDALRPLRARMQIVFQDPFASLSPRRTIEQIVG 377 Query: 425 EPMLVHGMKEGA----QERVDALLTRVGLTPEHGQRYPHEFSGGQRQRICIARALALNPK 480 E + +H + GA + DALL VGL P+ RYPHEFSGGQRQRI IAR L L P Sbjct: 378 EGLALHQPQLGAAGIRKAVADALL-EVGLPPDIMARYPHEFSGGQRQRIAIARVLVLKPD 436 Query: 481 IVIADESVSALDVSIQAQIVNLMLDLQAELGISFIFISHDMAVVERISHRVAVMYLGQIV 540 +V+ DE S+LDVS+Q Q++ L+L+LQ + +++IFISHD+AV+ ++HRV VM G++V Sbjct: 437 LVLLDEPTSSLDVSVQQQVLQLLLELQKKYELAYIFISHDLAVIRAMAHRVMVMKDGKVV 496 Query: 541 EIGPRRAIFENPQHPYTRKLMAA 563 E G +A+ P YT++L+AA Sbjct: 497 ESGMTQAVLSQPTEAYTQRLLAA 519 Score = 187 bits (474), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 109/265 (41%), Positives = 157/265 (59%), Gaps = 26/265 (9%) Query: 312 ILKVRDLTTRFDVKSGIFGRVKQRVHAVEKVSFDLYSGETLAIVGESGCGKSTTGRSLLR 371 +L++++L FD V VSF + +GE A+VGESG GK+ T S+LR Sbjct: 3 LLEIQNLQVSFDTSK-----------VVNDVSFSIAAGEKFALVGESGSGKTVTALSILR 51 Query: 372 LVDIAG--GRVEFGGRDLAQLPRSELRQLR-RDIQFIFQDPFASLDPRMTVGYSIMEPML 428 L A GR+ F G+D+ Q + +R +R +D+ IFQ+P +L+P T+G I E ++ Sbjct: 52 LNQDAAYAGRILFEGQDILQRSEAAMRAVRGKDVAMIFQEPMTALNPLFTIGNQIAEGLM 111 Query: 429 VHGMKEGAQERVDAL-----LTRVGLTPEHGQR---YPHEFSGGQRQRICIARALALNPK 480 +H EG R+ AL L + G+ PE +R YPH+ SGGQRQR IA ALA PK Sbjct: 112 LH---EGLSARIAALRAIELLDKTGI-PEPQRRALSYPHQLSGGQRQRAMIAMALACKPK 167 Query: 481 IVIADESVSALDVSIQAQIVNLMLDLQAELGISFIFISHDMAVVERISHRVAVMYLGQIV 540 ++IADE +ALDV+IQ QIV L+ LQ E ++ + I+HD+ +V + RV VM G +V Sbjct: 168 LLIADEPTTALDVTIQVQIVELLNQLQREENMAVLMITHDLNLVRHFADRVGVMEKGCLV 227 Query: 541 EIGPRRAIFENPQHPYTRKLMAAVP 565 E+ R +F P+ YTRKL+A+ P Sbjct: 228 EVAATRELFTAPRETYTRKLLASQP 252 >gi|134096443|ref|YP_001101518.1| oligopeptide ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 336 Score = 243 bits (620), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 140/327 (42%), Positives = 204/327 (62%), Gaps = 27/327 (8%) Query: 310 QPILKVRDLTTRF----DVKS---GIFGRVK--QRVHAVEKVSFDLYSGETLAIVGESGC 360 QP+L ++D++ RF D + +FG K + VHAV++V+ +++GE + +VGESGC Sbjct: 6 QPLLALQDVSKRFAQPLDTAARIANLFGAKKSAEVVHAVDQVTLTIHAGEVVGLVGESGC 65 Query: 361 GKSTTGRSLLRLVDIAGGRVEFGGRDLAQLPRSELRQLRRDIQFIFQDPFASLDPRMTVG 420 GKST GR + L ++ G + G +L +E RQ + +Q IFQDP+ASL+PRM + Sbjct: 66 GKSTLGRMAVGLHTLSSGSRLWKGVNLEVSSAAERRQQQLGMQMIFQDPYASLNPRMRIQ 125 Query: 421 YSIMEPMLVHGMKEGAQ--ERVDALLTRVGLTPEHGQRYPHEFSGGQRQRICIARALALN 478 I E + HGM ++ E V LL VGL P +R+PH+FSGGQR RI IARALA+ Sbjct: 126 DVIGEAPVAHGMVPASEQTEYVARLLQTVGLDPALARRFPHQFSGGQRARIGIARALAVK 185 Query: 479 PKIVIADESVSALDVSIQAQIVNLMLDLQAELGISFIFISHDMAVVERISHRVAVMYLGQ 538 P++++ DE+V+ALDVSIQAQ++NL + L+ EL ++++FISHD+ VV +S RV +MYLG+ Sbjct: 186 PELLVCDEAVAALDVSIQAQVLNLFIKLRDELNLTYLFISHDLGVVRHVSDRVLIMYLGR 245 Query: 539 IVEIGPRRAIFENPQHPYTRKLMAAVPVADPTLRQPGKKLLTDEIPSPI----------R 588 IVE P +F P HPYT L+A+ P + +++ + EIPSP+ R Sbjct: 246 IVESSPTAELFARPNHPYTVALLASAPRLE--VKKIDFYAVKGEIPSPLHPPSGCHFHPR 303 Query: 589 LVGDEPKV---EP-LKEVAPGHFVAQH 611 P+ +P LKE+AP HF A H Sbjct: 304 CPHAMPRCSVEQPLLKEIAPAHFSACH 330 Score = 162 bits (411), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 106/252 (42%), Positives = 149/252 (59%), Gaps = 15/252 (5%) Query: 20 SERTVDAVRDLSFHVDQGETLAIVGESGSGKSVSSLAIMRLIEHGGGKIASGSLQFRRRS 79 S V AV ++ + GE + +VGESG GKS +L M + H ++SGS R Sbjct: 37 SAEVVHAVDQVTLTIHAGEVVGLVGESGCGKS--TLGRMAVGLH---TLSSGS---RLWK 88 Query: 80 GQTLDLAQADNATMRSIRGAEIAMIFQEPMTSLNPVFTVGEQIAESIRLHQGMSRAAAQA 139 G L+++ +A R + + MIFQ+P SLNP + + I E+ H GM A+ Q Sbjct: 89 GVNLEVS---SAAERRQQQLGMQMIFQDPYASLNPRMRIQDVIGEAPVAH-GMVPASEQT 144 Query: 140 EAL-RMLEMVRIPEAKRVLGRHPHQLSGGMRQRVMIAMALSCKPSLLIADEPTTALDVTI 198 E + R+L+ V + A + R PHQ SGG R R+ IA AL+ KP LL+ DE ALDV+I Sbjct: 145 EYVARLLQTVGLDPA--LARRFPHQFSGGQRARIGIARALAVKPELLVCDEAVAALDVSI 202 Query: 199 QAQILQLIRSLQEEMQMGVIFITHDMGVVAEVADRVVVMCRGEKVEENDVQPLFAAPAHP 258 QAQ+L L L++E+ + +FI+HD+GVV V+DRV++M G VE + LFA P HP Sbjct: 203 QAQVLNLFIKLRDELNLTYLFISHDLGVVRHVSDRVLIMYLGRIVESSPTAELFARPNHP 262 Query: 259 YTQSLLAAVPRL 270 YT +LLA+ PRL Sbjct: 263 YTVALLASAPRL 274 >gi|134096444|ref|YP_001101519.1| oligopeptide ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 321 Score = 211 bits (538), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 120/257 (46%), Positives = 158/257 (61%), Gaps = 6/257 (2%) Query: 12 HLNVRFATSERTVDAVRDLSFHVDQGETLAIVGESGSGKSVSSLAIMRLIEHGGGKIASG 71 +L + F E V AV D+SF V G+ + +VGESGSGKS+++ +IM LI+ GKI +G Sbjct: 3 NLQMHFTAREGVVKAVEDVSFSVAPGQIMGLVGESGSGKSMTAYSIMGLID-APGKIVAG 61 Query: 72 SLQFRRRSGQTLDLAQADNATMRSIRGAEIAMIFQEPMTSLNPVFTVGEQIAESIRLHQG 131 + + + DL MR IRG IAMIFQ+PM +LNPV + Q+ E++ HQ Sbjct: 62 KILLKDQ-----DLRALSPEAMRRIRGNRIAMIFQDPMMTLNPVLRIDTQMMEAVLAHQD 116 Query: 132 MSRAAAQAEALRMLEMVRIPEAKRVLGRHPHQLSGGMRQRVMIAMALSCKPSLLIADEPT 191 + +A A+A A L V I L +PHQ SGGMRQRV IA+AL KP L+I DEPT Sbjct: 117 VGKATARAMARDALVRVGIASPDERLLAYPHQFSGGMRQRVAIAIALLNKPDLIICDEPT 176 Query: 192 TALDVTIQAQILQLIRSLQEEMQMGVIFITHDMGVVAEVADRVVVMCRGEKVEENDVQPL 251 TALDVTIQ QIL ++ L E +I+ITHD+ V+A +AD V VM G+ VE VQ + Sbjct: 177 TALDVTIQGQILYEMQKLCRESGTALIWITHDLSVIAGLADAVCVMYAGKIVESGSVQEV 236 Query: 252 FAAPAHPYTQSLLAAVP 268 P HPYT L+A+ P Sbjct: 237 LEQPQHPYTHGLIASSP 253 Score = 177 bits (448), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 104/260 (40%), Positives = 150/260 (57%), Gaps = 16/260 (6%) Query: 315 VRDLTTRFDVKSGIFGRVKQRVHAVEKVSFDLYSGETLAIVGESGCGKSTTGRSLLRLVD 374 +++L F + G+ V AVE VSF + G+ + +VGESG GKS T S++ L+D Sbjct: 1 MQNLQMHFTAREGV-------VKAVEDVSFSVAPGQIMGLVGESGSGKSMTAYSIMGLID 53 Query: 375 ----IAGGRVEFGGRDLAQLPRSELRQLRRD-IQFIFQDPFASLDPRMTVGYSIMEPMLV 429 I G++ +DL L +R++R + I IFQDP +L+P + + +ME +L Sbjct: 54 APGKIVAGKILLKDQDLRALSPEAMRRIRGNRIAMIFQDPMMTLNPVLRIDTQMMEAVLA 113 Query: 430 HGMKEGAQERVDA--LLTRVGLTP--EHGQRYPHEFSGGQRQRICIARALALNPKIVIAD 485 H A R A L RVG+ E YPH+FSGG RQR+ IA AL P ++I D Sbjct: 114 HQDVGKATARAMARDALVRVGIASPDERLLAYPHQFSGGMRQRVAIAIALLNKPDLIICD 173 Query: 486 ESVSALDVSIQAQIVNLMLDLQAELGISFIFISHDMAVVERISHRVAVMYLGQIVEIGPR 545 E +ALDV+IQ QI+ M L E G + I+I+HD++V+ ++ V VMY G+IVE G Sbjct: 174 EPTTALDVTIQGQILYEMQKLCRESGTALIWITHDLSVIAGLADAVCVMYAGKIVESGSV 233 Query: 546 RAIFENPQHPYTRKLMAAVP 565 + + E PQHPYT L+A+ P Sbjct: 234 QEVLEQPQHPYTHGLIASSP 253 >gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC transporter ATP-binding subunit [Herminiimonas arsenicoxydans] Length = 366 Score = 145 bits (367), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 91/272 (33%), Positives = 149/272 (54%), Gaps = 21/272 (7%) Query: 312 ILKVRDLTTRFDVKSGIFGRVKQRVHAVEKVSFDLYSGETLAIVGESGCGKSTTGRSLLR 371 +L++R+LT RF + V+ +S + +GE ++G SGCGK+T R + Sbjct: 3 LLEIRNLTRRFGDNT-----------VVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAG 51 Query: 372 LVDIAGGRVEFGGRDLAQLPRSELRQLRRDIQFIFQDPFASLDPRMTVGYSIMEPM-LVH 430 + G++ G DL +P + R ++ +FQ+ +L P MTV +I P+ + + Sbjct: 52 FDEPDAGKILLDGVDLTGVPPEQ-----RVVRTVFQN--YALFPHMTVAGNIAFPLEMAN 104 Query: 431 GMKEGAQERVDALLTRVGLTPEHGQRYPHEFSGGQRQRICIARALALNPKIVIADESVSA 490 K +++VD L V LT RYPHE SGGQRQR+ IARAL PK+++ DE +SA Sbjct: 105 TPKSEIKQKVDEALEDVRLTG-FAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSA 163 Query: 491 LDVSIQAQIVNLMLDLQAELGISFIFISHDMAVVERISHRVAVMYLGQIVEIGPRRAIFE 550 LD ++ Q+ +++LQ E+GI+F++++HD A +SHR+AVM G I ++ I+ Sbjct: 164 LDAQLREQMQIELINLQKEVGITFVYVTHDQAEALALSHRIAVMNKGNIEQLDEPTRIYS 223 Query: 551 NPQHPYTRKLMAAVPVADPTLRQ-PGKKLLTD 581 P+ + + + D T+ Q G +L D Sbjct: 224 YPRSRFVADFIGTCNLFDGTVTQIAGDTMLLD 255 Score = 85.9 bits (211), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 71/249 (28%), Positives = 121/249 (48%), Gaps = 26/249 (10%) Query: 7 VLDVSHLNVRFATSERTVDAVRDLSFHVDQGETLAIVGESGSGKSVSSLAIMRLIEHGGG 66 +L++ +L RF + TV V ++S ++ GE ++G SG GK+ I E G Sbjct: 3 LLEIRNLTRRFG--DNTV--VDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDEPDAG 58 Query: 67 KIASGSLQFRRRSGQTLDLAQADNATMRSIRGAEIAMIFQEPMTSLNPVFTVGEQIAESI 126 KI G L + +R++ FQ +L P TV IA + Sbjct: 59 KIL--------LDGVDLTGVPPEQRVVRTV--------FQN--YALFPHMTVAGNIAFPL 100 Query: 127 RLHQGMSRAAAQAEALRMLEMVRIPEAKRVLGRHPHQLSGGMRQRVMIAMALSCKPSLLI 186 + ++ + + LE VR+ R+PH+LSGG RQRV IA AL +P LL+ Sbjct: 101 EMAN-TPKSEIKQKVDEALEDVRL---TGFAARYPHELSGGQRQRVSIARALVTRPKLLL 156 Query: 187 ADEPTTALDVTIQAQILQLIRSLQEEMQMGVIFITHDMGVVAEVADRVVVMCRGEKVEEN 246 DEP +ALD ++ Q+ + +LQ+E+ + +++THD ++ R+ VM +G + + Sbjct: 157 LDEPLSALDAQLREQMQIELINLQKEVGITFVYVTHDQAEALALSHRIAVMNKGNIEQLD 216 Query: 247 DVQPLFAAP 255 + +++ P Sbjct: 217 EPTRIYSYP 225 >gi|134094055|ref|YP_001099130.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 376 Score = 115 bits (289), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 72/237 (30%), Positives = 133/237 (56%), Gaps = 14/237 (5%) Query: 331 RVKQRVHA-VEKVSFDLYSGETLAIVGESGCGKSTTGRSLLRLVDIAGGRVEFGGRDLAQ 389 R+ Q++H V +SF L G+ ++G+SGCGK+T R++ + G + GG++++ Sbjct: 25 RLGQQMHEIVHSLSFALQRGQIGCLLGQSGCGKTTVLRAIAGFEPLTEGSITLGGKEISN 84 Query: 390 LPRSELRQLRRDIQFIFQDPFASLDPRMTVGYSIMEPMLVHGMKEGA----QERVDALLT 445 + + R+ I +FQD +L P ++V ++ G+++ A Q R+ ALLT Sbjct: 85 AHFTATPETRQ-IGVVFQD--YALFPHLSVADNVG-----FGLRKLAAPERQARIAALLT 136 Query: 446 RVGLTPEHGQRYPHEFSGGQRQRICIARALALNPKIVIADESVSALDVSIQAQIVNLMLD 505 VGL + G+++PHE SGGQ+QR+ +ARALA P +++ DE S LDV ++ ++ + + D Sbjct: 137 LVGLASQ-GKKFPHELSGGQQQRVALARALAPQPDLLLLDEPFSNLDVDLRERLASEVRD 195 Query: 506 LQAELGISFIFISHDMAVVERISHRVAVMYLGQIVEIGPRRAIFENPQHPYTRKLMA 562 + E+G + + ++HD I+ ++ VM G IV+ ++ P + + + Sbjct: 196 ILKEVGTTAVLVTHDQHEAFAIADQIGVMQDGVIVQWDSAYNLYHRPANRFVADFIG 252 Score = 86.7 bits (213), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 67/259 (25%), Positives = 128/259 (49%), Gaps = 22/259 (8%) Query: 8 LDVSHLNVRFATSERTVDAVRDLSFHVDQGETLAIVGESGSGKSVSSLAIMRLIEHGGGK 67 L + + V + ++ + V LSF + +G+ ++G+SG GK+ ++R I G Sbjct: 15 LSLESIRVGYRLGQQMHEIVHSLSFALQRGQIGCLLGQSGCGKTT----VLRAIA-GFEP 69 Query: 68 IASGSLQFRRRSGQTLDLAQADNATMRSI-RGAEIAMIFQEPMTSLNPVFTVGEQIAESI 126 + GS+ TL + NA + +I ++FQ+ +L P +V + + + Sbjct: 70 LTEGSI--------TLGGKEISNAHFTATPETRQIGVVFQD--YALFPHLSVADNVGFGL 119 Query: 127 RLHQGMSRAAAQAEALRMLEMVRIPEAKRVLGRHPHQLSGGMRQRVMIAMALSCKPSLLI 186 R ++ QA +L +V + + + PH+LSGG +QRV +A AL+ +P LL+ Sbjct: 120 R---KLAAPERQARIAALLTLVGLASQGK---KFPHELSGGQQQRVALARALAPQPDLLL 173 Query: 187 ADEPTTALDVTIQAQILQLIRSLQEEMQMGVIFITHDMGVVAEVADRVVVMCRGEKVEEN 246 DEP + LDV ++ ++ +R + +E+ + +THD +AD++ VM G V+ + Sbjct: 174 LDEPFSNLDVDLRERLASEVRDILKEVGTTAVLVTHDQHEAFAIADQIGVMQDGVIVQWD 233 Query: 247 DVQPLFAAPAHPYTQSLLA 265 L+ PA+ + + Sbjct: 234 SAYNLYHRPANRFVADFIG 252 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.136 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,078,943 Number of extensions: 43028 Number of successful extensions: 350 Number of sequences better than 1.0e-08: 45 Number of HSP's gapped: 280 Number of HSP's successfully gapped: 82 Length of query: 617 Length of database: 1,000,347 Length adjustment: 87 Effective length of query: 530 Effective length of database: 713,682 Effective search space: 378251460 Effective search space used: 378251460 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)