BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1696.p
         (330 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094314|ref|YP_001099389.1| RpiR family transcriptional reg...    60   1e-10

>gi|134094314|ref|YP_001099389.1| RpiR family transcriptional
           regulator [Herminiimonas arsenicoxydans]
          Length = 283

 Score = 60.1 bits (144), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 109/254 (42%), Gaps = 12/254 (4%)

Query: 24  YPQLSKSHRKTADYVLGNPFRAATMTIDELSEAAGISVATANRFAHALGFDGYASFRAAL 83
           Y  LSKS +K A  VL  P  A    I  L++ A +S  T  RF  A+GFDG+ +F+  L
Sbjct: 10  YDSLSKSEKKVALAVLEQPELAIAENITALAKKADVSEPTVVRFCRAIGFDGWHAFKMKL 69

Query: 84  VSDFATTLAPVEKLREQVQRAATSAEIMAAACDSDIANIEATRRMLNPDHCEQAVEMILS 143
               A  LAP        +  AT  ++++  C   I  +   R  L+ +  EQA++++  
Sbjct: 70  AQGLA--LAPGADESPAPEDLAT--DLVSKICSRSINTLLDLRNSLDANAIEQALQVLAR 125

Query: 144 AQRVFITGFGASAYLSGLMAHTLEPYVRTVNSMAMAGGPSQAARQFFKLDSNDLVIAMVF 203
           A R+   G G S  ++    H    + R+         P   +     L   D V+A+  
Sbjct: 126 ANRIEFYGQGTSGIIAADAQHK---FFRSGIPTVAYADPHIHSIAASLLKKGDAVVAISQ 182

Query: 204 PRYAADTVWLTQRAVEKGARILALTDHPGSPLVPLADV----TLYAQTDGRLSPTSDAAA 259
              +   +   Q A   GA ++ L    G+PL  LA V     L+  TD     ++  A 
Sbjct: 183 RGNSIALLRSVQLARSCGADVVILAPS-GTPLAELATVLIPIDLHFHTDPYTPISARLAH 241

Query: 260 LILIQALCDAVAHR 273
           L++I  L   +A R
Sbjct: 242 LVVIDILAVGLALR 255


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.128    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 582,717
Number of extensions: 21931
Number of successful extensions: 81
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 248
Effective length of database: 730,157
Effective search space: 181078936
Effective search space used: 181078936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)