BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1695.p (311 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093979|ref|YP_001099054.1| LysR family transcriptional reg... 89 2e-19 gi|134093619|ref|YP_001098694.1| putative transcriptional regula... 74 1e-14 gi|134093581|ref|YP_001098656.1| LysR family transcriptional reg... 72 5e-14 gi|134094120|ref|YP_001099195.1| putative transcriptional regula... 68 5e-13 gi|134093718|ref|YP_001098793.1| LysR family transcriptional reg... 62 5e-11 >gi|134093979|ref|YP_001099054.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 297 Score = 89.4 bits (220), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 81/257 (31%), Positives = 127/257 (49%), Gaps = 18/257 (7%) Query: 1 MNI--RFLETFVWLARLRNFRLTAERLHTTQAAVSSRIASLEQDFGVRLFDRSAREVALT 58 MNI R L FV +A +F A RLH TQ +S I SLE GV+LF R++R VALT Sbjct: 1 MNIELRQLRYFVTVAEEMHFGRAAIRLHMTQPPLSQAIQSLEAMLGVQLFRRTSRSVALT 60 Query: 59 ADGSKALVYAERMVKLMREMKDDMSDREVFAGV---IRIGVIESIVHSWFPDFLGRLHQA 115 GS L A+R+++ + D M R V +G + + + + +S P FL ++ Sbjct: 61 PAGSALLPEAQRILQQTAALPDLM--RRVTSGASGRLSLAFVSTADYSVLPPFLREFRES 118 Query: 116 FPRLQIEIVSDTTIHLHEQFSKSNLDLVLQAEPVIGPQVSNIALCELPM----RWVGSP- 170 +P ++I++ TT + + +D+ L P+ P + + L LP+ + +P Sbjct: 119 YPGVEIDLREATTDVQLDDLMQGRIDVGLLIPPL--PDKAKLQLDYLPVLSEPLILAAPK 176 Query: 171 --KLDIGSETLSLADLAAFPIISFARNSGPHAVIERLFSGSERAERTLHINCIA-SVATM 227 K G ++++L LA P+I F R P A + + S A T HI A + T+ Sbjct: 177 GLKALKGKQSVALQSLAELPLIIFPRRIAP-AFHDAILSCYRDAGLTPHIGQEAIQMQTI 235 Query: 228 IRLATDGFGITAVPPAI 244 I L + G GI VP ++ Sbjct: 236 IGLVSAGMGIALVPQSV 252 >gi|134093619|ref|YP_001098694.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 367 Score = 73.9 bits (180), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 80/307 (26%), Positives = 140/307 (45%), Gaps = 20/307 (6%) Query: 3 IRFLETFVWLARLRNFRLTAERLHTTQAAVSSRIASLEQDFGVRLFDRSAREVALTADGS 62 +R L+ F +ARL +F AE LH TQ AVS+++ LE G+ LF++ +++ LT G+ Sbjct: 50 LRQLKVFETVARLLSFSRAAEELHLTQPAVSTQVKKLEDHAGLALFEQLGKKIYLTPGGT 109 Query: 63 KALVYAERMVKLMREMKDDMSD-REVFAGVIRIGVIESIVHSWFPDFLGRLHQAFPRLQI 121 + L Y+ +++ +E +D M+ + + G + + VI S +FP RL F R Sbjct: 110 ELLHYSRTIIQQFQEAEDAMTQFKGITGGKLNVAVI-SAGDYFFP----RLLVEFARSHQ 164 Query: 122 EIVSDTTIHLHE----QFSKSNLDLVLQAEPVIGPQVSNIALCELPMRWVGSPKLD-IGS 176 + + ++H E Q + + DL + P N P V +P + Sbjct: 165 GVTLNLSVHNREGLLNQLANNLTDLAIMVRPPTDMDTINEPFAPHPYVIVAAPDHHLVSK 224 Query: 177 ETLSLADLAAFPIISFARNSGPHAVIERLFSGSERAERTLHINCIASVATMIRLATDGFG 236 + + ++ L P + + S +E F GS + + + I S T+ + G G Sbjct: 225 KNIPMSTLIHEPFVVREKGSDTWHSMEDGF-GSRIDDLNIAME-IKSTETIKQAVIAGMG 282 Query: 237 ITAVPPAIIQRELNEESLHLLRVDTEFPALVLIACFRSDHENPLTETVARIAQETAADFA 296 I+ + I EL SL +L V+ FP V++ + +N VA+ + +F Sbjct: 283 ISFLSAHTISMELQAGSLTVLDVEG-FP--VMLNWYVVHRKNKRLPPVAQAFR----NFL 335 Query: 297 LNWGQEI 303 LN G E+ Sbjct: 336 LNEGPEL 342 >gi|134093581|ref|YP_001098656.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 315 Score = 71.6 bits (174), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 77/150 (51%), Gaps = 1/150 (0%) Query: 1 MNIRFLETFVWLARLRNFRLTAERLHTTQAAVSSRIASLEQDFGVRLFDRSAREVALTAD 60 M + L+ V +AR ++F AE H Q +S I LE + GV LF+R E+++T Sbjct: 1 MTLTELKYIVAVAREKHFGHAAEACHVAQPTLSVAIKKLEDELGVTLFERGGSEISMTPL 60 Query: 61 GSKALVYAERMVKLMREMKD-DMSDREVFAGVIRIGVIESIVHSWFPDFLGRLHQAFPRL 119 G + + AER+++ +K+ +++ G R+G+I +I P + + + P++ Sbjct: 61 GVQIVAQAERVLEQTAAIKEIAKQNKDPLVGPFRLGIIYTIAPYLLPPLVKAMIERVPQM 120 Query: 120 QIEIVSDTTIHLHEQFSKSNLDLVLQAEPV 149 + + + T+ L EQ + +D + A P+ Sbjct: 121 PLVLQENFTVKLLEQLRQGEIDAAIVALPI 150 >gi|134094120|ref|YP_001099195.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 284 Score = 68.2 bits (165), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 42/140 (30%), Positives = 70/140 (50%), Gaps = 1/140 (0%) Query: 5 FLETFVWLARLRNFRLTAERLHTTQAAVSSRIASLEQDFGVRLFDRSAREVALTADGSKA 64 L +FV + +F A+ +H TQ+ +S +I LE G L +RS R V T +G + Sbjct: 6 LLRSFVAVVDTGSFTRAADSVHLTQSTISQQIRRLEMQVGCDLLNRSGRYVTTTLEGERL 65 Query: 65 LVYAERMVKLMREMKDDMSDREVFAGVIRIGVIESIVHSWFPDFLGRLHQAFPRLQIEIV 124 L YA R+ +LM E + ++ + G +R+GV E V L + +++E+ Sbjct: 66 LRYAHRIAQLMDEAMEQIA-QSAGKGEVRLGVPEDFVGRALTPTLSAFIDTYSAVRLEVS 124 Query: 125 SDTTIHLHEQFSKSNLDLVL 144 S + L ++F + LDL L Sbjct: 125 SGMSHELWQRFQRGELDLAL 144 >gi|134093718|ref|YP_001098793.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 287 Score = 61.6 bits (148), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 72/159 (45%), Gaps = 2/159 (1%) Query: 1 MNIRFLETFVWLARLRNFRLTAERLHTTQAAVSSRIASLEQDFGVRLFDRSAREVALTAD 60 M+I TF+++ R +F A RLH TQ V++R+ +LE G LF R+ LT D Sbjct: 1 MDIELARTFLYIVRSGSFIAAATRLHVTQTTVTARVQNLESQLGCSLFVRNRAGARLTDD 60 Query: 61 GSKALVYAERMVKLMREMKDDMSDREVFAGVIRIGVIESIVHSWFPDFLGRLHQAFPRLQ 120 G + + YA ++V+ + D+ + + + +G S+ + + +L +A P Sbjct: 61 GERFVRYASQLVQTWDAARRDLPLPDGYGDSLALGSEVSLCNPLMLQWTMQLRRALPSHA 120 Query: 121 IEIVSDTTIHLHEQFSKSNLDLVLQAEPVI--GPQVSNI 157 I + L + LD L PV G QV + Sbjct: 121 IRVEVGDGSSLQSKLEHGLLDAALVYRPVYWTGMQVEQL 159 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.324 0.136 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 552,123 Number of extensions: 21304 Number of successful extensions: 127 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 129 Number of HSP's successfully gapped: 6 Length of query: 311 Length of database: 1,000,347 Length adjustment: 82 Effective length of query: 229 Effective length of database: 730,157 Effective search space: 167205953 Effective search space used: 167205953 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 128 (53.9 bits)