BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1694.p
         (437 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094710|ref|YP_001099785.1| putative transport protein [Her...   384   e-108
gi|134095305|ref|YP_001100380.1| putative permease [Herminiimona...   381   e-107

>gi|134094710|ref|YP_001099785.1| putative transport protein
           [Herminiimonas arsenicoxydans]
          Length = 435

 Score =  384 bits (985), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 209/406 (51%), Positives = 278/406 (68%), Gaps = 1/406 (0%)

Query: 16  SAAAPLE-ATYGKIAWRLIPFLVFLFVLAWIDRVNVGFAKLQMLQDLQFSEAVYGLGAGI 74
           S  A LE  TY K+  RL+PFL   +V A++DRVNVGFAKL ML DLQFSE VYGLGAGI
Sbjct: 10  SDRASLENRTYAKVTLRLLPFLFICYVAAYLDRVNVGFAKLSMLNDLQFSETVYGLGAGI 69

Query: 75  FFIGYFLFEVPSNLLLEKIGARKTLARITILWGLASMAMAYVSTPTSFYVLRFLLGIFEA 134
           FFIGYFLFEVPSN+++ ++GAR  +ARI I W + S A  +V++PT FYV+RFLLG+ EA
Sbjct: 70  FFIGYFLFEVPSNIIMHRVGARVWIARIMITWSVLSAATMFVTSPTMFYVIRFLLGVAEA 129

Query: 135 GFFPGVVLYLTYWFPAQRRARVNGLFMTSFAIAGAVGGPIAGFIMSRMEGVGHLANWQWL 194
           GFFPG+VLYLTYWFP+ RR R+N LFM    IAG VGGP++G+IM+   G      WQWL
Sbjct: 130 GFFPGIVLYLTYWFPSSRRGRMNALFMIGIPIAGVVGGPLSGWIMNHFAGANGWYGWQWL 189

Query: 195 FIIEGIPSILAGFAVLAWLPEKPANAKWLSEAEKNAVTQALALENSAPGKHFSFKDACSN 254
           F++E IPS+L G   L +LP     + WLSE EK  + + +A + S   K  S     +N
Sbjct: 190 FLLEAIPSLLLGVITLFYLPNTIRASTWLSENEKQVLEENIAQDGSDTSKSHSVAGVFTN 249

Query: 255 YRVWICAAVYFCVVSGNATIAFWAPSIIKEIGVKGNLQIGLISAIPFVAGTLAMIWNGFH 314
            +VW+ AA+YFC + G   I+F+ P+++K  GVK  L +GL++AIP+  G +A +     
Sbjct: 250 PKVWLMAAIYFCCMMGLYGISFYLPTLVKASGVKDALDVGLLTAIPYTCGVIATLLVARS 309

Query: 315 SDKTGERRLHSAMATLIACIGLVATGMTLGNATLALCSLTLAAIGILAAFPVFWSIPGAF 374
           +D+  ERR H A+A+ +  +GL  + +   N  LAL +L+L   G+L+  PVFW+ P A 
Sbjct: 310 ADRMRERRWHFAIASALGGLGLFLSTVYGDNVVLALLALSLGTAGMLSTMPVFWTYPSAI 369

Query: 375 LAGTAAAGGIALINSIGNLAGFVAPYMIGALKTSTGSLSSGLYFVA 420
           L G AAA GI LINS+GNLAGFV+P ++G LK  TGS ++G+YFVA
Sbjct: 370 LGGAAAAAGIGLINSVGNLAGFVSPSIVGWLKDVTGSTNAGMYFVA 415


>gi|134095305|ref|YP_001100380.1| putative permease [Herminiimonas
           arsenicoxydans]
          Length = 450

 Score =  381 bits (979), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 193/414 (46%), Positives = 272/414 (65%), Gaps = 3/414 (0%)

Query: 25  YGKIAWRLIPFLVFLFVLAWIDRVNVGFAKLQMLQDLQFSEAVYGLGAGIFFIGYFLFEV 84
           Y K+ WRLIPFL   +++A++DR ++ FA++QM  DL FS A+YGLGAGIFFIGY LFEV
Sbjct: 26  YSKVTWRLIPFLFICYIVAYLDRTSISFAQMQMQNDLGFSAAIYGLGAGIFFIGYSLFEV 85

Query: 85  PSNLLLEKIGARKTLARITILWGLASMAMAYVSTPTSFYVLRFLLGIFEAGFFPGVVLYL 144
           PSN+L+++IGARKTL RI +LWG+ +  M +V+TP  FYV+RFLLG+FEAGFFPGV+ +L
Sbjct: 86  PSNMLMQRIGARKTLLRIMVLWGIVATGMMFVTTPMQFYVMRFLLGVFEAGFFPGVIYFL 145

Query: 145 TYWFPAQRRARVNGLFMTSFAIAGAVGGPIAGFIMSRMEGVGHLANWQWLFIIEGIPSIL 204
           T W+P  RR  V  +FM    I+G +GGPIAG+ ++ ++GV     WQWLF IEG+P+IL
Sbjct: 146 TKWYPGSRRGAVLSMFMLGMPISGVLGGPIAGWALNSLDGVNGWEGWQWLFFIEGLPAIL 205

Query: 205 AGFAVLAWLPEKPANAKWLSEAEKNAVTQALALE--NSAPGKHFSFKDACSNYRVWICAA 262
            G  V   L ++P+ AKWL+E E+  + + + ++  N+ P    S   A  + RV+I + 
Sbjct: 206 LGLMVYWILCDEPSQAKWLTERERALIIRNVKVDQANNPPEHGHSMLSALKDSRVYILSL 265

Query: 263 VYFCVVSGNATIAFWAPSIIKEIGVKGNLQIGLISAIPFVAGTLAMIWNGFHSDKTGERR 322
            YF  +SG   I FW P+++K  GV    QIGL S IPF    + M+     SDK  ERR
Sbjct: 266 SYFTFISGIYAIGFWLPAMLKNAGVIDVFQIGLYSMIPFGISAIGMVLISRSSDKRLERR 325

Query: 323 LHSAMATLIACIGLVATGMTLGNATLALCSLTLAAIGILAAFPVFWSIPGAFLAGT-AAA 381
            H A+   I    L A  M   + T++L  +T+A   I    P+FWSI  A+  GT AAA
Sbjct: 326 WHLALCAFIGAASLSAITMFSADLTMSLIVMTVATTAIYTLLPLFWSITSAYFTGTVAAA 385

Query: 382 GGIALINSIGNLAGFVAPYMIGALKTSTGSLSSGLYFVAALEFLASFLVVVFVK 435
           G IALINS+G + G  +P +IG +KT+TGS+S+GL+ ++A+  L   +++V +K
Sbjct: 386 GSIALINSLGLIGGMASPSIIGWVKTTTGSMSNGLFAISAMLVLGGIVLLVGIK 439


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.327    0.139    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 708,808
Number of extensions: 26063
Number of successful extensions: 146
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 3
Length of query: 437
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 353
Effective length of database: 723,567
Effective search space: 255419151
Effective search space used: 255419151
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 130 (54.7 bits)