BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1690.p
         (250 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094034|ref|YP_001099109.1| putative transglycosylase [Herm...   222   1e-59

>gi|134094034|ref|YP_001099109.1| putative transglycosylase
           [Herminiimonas arsenicoxydans]
          Length = 269

 Score =  222 bits (565), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 112/200 (56%), Positives = 137/200 (68%), Gaps = 5/200 (2%)

Query: 21  VYRYTDADGAVHFYAQNLDDPDKLMASSAALLNHP-----GSKEAVTPADPPFVRTMLTH 75
           VY Y DA G  HF  + LD   +L A    +LN       GS E     + P  R +  H
Sbjct: 24  VYGYIDASGEAHFATEKLDQRYQLFARGDQVLNAARLVPLGSTEKGAEKETPLFRYLSQH 83

Query: 76  RDARKYDSLLTEAASEFGLDAALLKAVLTAESGFNATAVSSKGAVGLMQILPDTAERYGL 135
            + +KY+ LL +AA+EF LD ALLKAV+ AESGFN  AVS KGAVGLMQ++P TAER+GL
Sbjct: 84  PNLKKYEKLLNDAANEFNLDPALLKAVMAAESGFNPNAVSPKGAVGLMQLMPATAERFGL 143

Query: 136 QGDRRKTLHQKLTDPKINIRLAARYLRDLMAMFPQHVELAIASYNAGEGTVQKYGNQIPP 195
           Q DR+KT+ QKLTDPK NIRL ARYLR L  M+P    L +ASYNAGEG +QKY N IPP
Sbjct: 144 QADRKKTVAQKLTDPKTNIRLGARYLRVLRDMYPNQQHLVLASYNAGEGAIQKYNNTIPP 203

Query: 196 YPETQGYVRLVSRFYELYRP 215
           +PET+ YV+LV++FY LY+P
Sbjct: 204 FPETRNYVKLVTQFYRLYQP 223


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.316    0.132    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 480,296
Number of extensions: 19033
Number of successful extensions: 69
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 171
Effective length of database: 740,042
Effective search space: 126547182
Effective search space used: 126547182
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 127 (53.5 bits)