BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1689.p (771 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094033|ref|YP_001099108.1| DNA topoisomerase IV subunit A ... 1260 0.0 gi|134095749|ref|YP_001100824.1| DNA gyrase subunit A [Herminiim... 408 e-115 >gi|134094033|ref|YP_001099108.1| DNA topoisomerase IV subunit A [Herminiimonas arsenicoxydans] Length = 776 Score = 1260 bits (3260), Expect = 0.0, Method: Compositional matrix adjust. Identities = 602/767 (78%), Positives = 678/767 (88%) Query: 1 MTDQPTLFDQVPTAPDGESLTLSTFAERAYLDYAISVVKGRALPDVADGQKPVQRRILYA 60 MTDQ LFD A GESLTL+TFAERAYLDYAISVVKGRALPDV DGQKPVQRRIL+A Sbjct: 1 MTDQANLFDTAAPADGGESLTLATFAERAYLDYAISVVKGRALPDVCDGQKPVQRRILFA 60 Query: 61 MNELSLNSAAKPRKSAAVVGDVLGKLHPHGDQSVYDALVRMAQDFSLRYPLIDGHGNFGS 120 MNEL LNSAAKPRKSAAVVGDVLGKLHPHGDQSVYDALVRMAQDFSLRYPLIDG GNFGS Sbjct: 61 MNELGLNSAAKPRKSAAVVGDVLGKLHPHGDQSVYDALVRMAQDFSLRYPLIDGQGNFGS 120 Query: 121 RDGDGAAAMRYTEARLTPISKLLLDEIDMGTVEFQPNYDGSTEEPRLLPARLPFLLLNGA 180 RDGDGAAAMRYTEARLTPI+KLL++EIDMGTV+FQPNYDGSTEEP+LLP+RLPF+LLNGA Sbjct: 121 RDGDGAAAMRYTEARLTPIAKLLMEEIDMGTVDFQPNYDGSTEEPKLLPSRLPFVLLNGA 180 Query: 181 SGIAVGMATEIPSHNLTEVAKAAVAMIRNPKITHAELMELIPGPDFPGGGQIITPKSTIA 240 SGIAVGMATEIPSHNL EVA+AAVA+IRNPK+TH EL+ ++PGPDFPGGGQIIT + I+ Sbjct: 181 SGIAVGMATEIPSHNLREVAQAAVALIRNPKLTHEELVAIVPGPDFPGGGQIITSPTAIS 240 Query: 241 EMYQSGRGSLKVRARWKIEDLARGQWQAVITELPPGVSSQRVLEEIEELTNPKLKLGKKS 300 ++Y+SGRGS+KVRA WKIED+ARGQWQAV+TELP G SSQRVLEEIEELTNPK++LGKKS Sbjct: 241 DIYRSGRGSVKVRATWKIEDMARGQWQAVVTELPHGTSSQRVLEEIEELTNPKIRLGKKS 300 Query: 301 LTPEQQTQKTTILGLLDAVRDESGREAPVRLVFEPKSKNQDQTEFMNTLLAQTSLETSAS 360 L+PEQ K T+L +LD VRDESGR+APVRLVFEPKSKNQDQTEF N LLA TSLETS S Sbjct: 301 LSPEQLALKQTVLAMLDTVRDESGRDAPVRLVFEPKSKNQDQTEFTNMLLAHTSLETSVS 360 Query: 361 LNLVMIGGDGRPRQKNLSDILTEWISFRFETVTRRTQFRMQKVNDRIHILEGREAVLLNI 420 +NLVMIGGDG+PRQK L DIL EW+ FRF T+TRR+QF++QKVNDRIHILEGREA+LLNI Sbjct: 361 INLVMIGGDGKPRQKALGDILREWVDFRFTTITRRSQFKLQKVNDRIHILEGREAILLNI 420 Query: 421 DKVIKIIRESDEPKPALIDAFKLSERQAEDILEIRLRQLARLEAIKIQQELAELRNEKTT 480 DKVIKIIRESDEPKPAL+DAF+LSERQA+DILEIRLRQLARLE IKIQQELAELR+EK+T Sbjct: 421 DKVIKIIRESDEPKPALMDAFRLSERQADDILEIRLRQLARLETIKIQQELAELRSEKST 480 Query: 481 LQDLLDNPASMKKLVIKEIEGDAKTYGDARRTIIEEAERATFEQKVIDEPVTVIISQKGW 540 LQDLLDNP+SMK+LVIKEIE D K +GD RRT+IE AE+A E +VIDEPVTV+ISQKGW Sbjct: 481 LQDLLDNPSSMKRLVIKEIEADEKQFGDKRRTLIEVAEKAVVETRVIDEPVTVVISQKGW 540 Query: 541 VRARTGHGHDATQFTFKAGDSLYGAFECRTVDNLLAFGSNGRVYTIAVNALPNARGDGVP 600 VRARTGHGHDA QFTFKA D+LY FECRTVD LL FGSNGR+Y++AV ALP ARGDGVP Sbjct: 541 VRARTGHGHDAAQFTFKASDALYDTFECRTVDTLLVFGSNGRIYSVAVAALPGARGDGVP 600 Query: 601 VTTLIELASGSSIQHYFAGPADTTLLLASDAAAGFIAKASDMFGRVKGGKSFFTLDEGAL 660 +TTL+ELASG+ + HYFAGPAD TLLLAS A GF AK+ DM R + GK+F TLDEG Sbjct: 601 ITTLVELASGTRVLHYFAGPADVTLLLASTAGYGFTAKSGDMVSRTRSGKAFITLDEGDE 660 Query: 661 PLAPTPVAADASAVACVSANGRLLVFGLDEMKTLSSGGRGVNLMELEKNEKLVAAQAISQ 720 PL P P+ A ASA+AC+S GR+LVFG+DE+K+L++GGRGV LM+LEKNEKL+AAQ ISQ Sbjct: 661 PLTPRPIFAGASAIACLSEKGRVLVFGIDEIKSLTAGGRGVILMDLEKNEKLLAAQPISQ 720 Query: 721 KGVVVYGTGNVGKAKEIPLSGEKLLAHVGKRARKGRVLESRIKAAGL 767 +GVVV G G KA+EI LS L H+GKRARKG+ LES+IKA L Sbjct: 721 RGVVVSGIGRGAKAQEILLSASGLAVHIGKRARKGKGLESKIKATTL 767 >gi|134095749|ref|YP_001100824.1| DNA gyrase subunit A [Herminiimonas arsenicoxydans] Length = 871 Score = 408 bits (1049), Expect = e-115, Method: Compositional matrix adjust. Identities = 288/819 (35%), Positives = 421/819 (51%), Gaps = 109/819 (13%) Query: 20 LTLSTFAERAYLDYAISVVKGRALPDVADGQKPVQRRILYAMNELSLNSAAKPR-KSAAV 78 ++L ++YLDYA+SV+ GRALPDV DG KPV RR+L+AM+E++ N +P K A V Sbjct: 11 ISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMN-NVWNRPFVKCARV 69 Query: 79 VGDVLGKLHPHGDQSVYDALVRMAQDFSLRYPLIDGHGNFGSRDGDGAAAMRYTEARLTP 138 VG+ +GK HPHGD S+YD LVRMAQ FSLRY L+DG GNFGS DGD AAAMRYTE RL Sbjct: 70 VGETMGKYHPHGDASIYDTLVRMAQPFSLRYMLVDGQGNFGSIDGDNAAAMRYTECRLDK 129 Query: 139 ISKLLLDEIDMGTVEFQPNYDGSTEEPRLLPARLPFLLLNGASGIAVGMATEIPSHNLTE 198 I+ LL ++D TV+F PNYDG EP +LP R+P LL+NG+SGIAVGMAT IP HN+TE Sbjct: 130 IAGELLADLDKETVDFVPNYDGKEREPSVLPTRIPNLLINGSSGIAVGMATNIPPHNITE 189 Query: 199 VAKAAVAMIRNPKITHAELMELIPGPDFPGGGQIITPKSTIAEMYQSGRGSLKVRARWKI 258 V A+ ++RN + T EL+E+IP PDFP GG II S + + Y++GRG + +RA+ Sbjct: 190 VIDGALHVLRNAEATIDELIEIIPAPDFPTGG-IIYGVSGVRDGYRTGRGRVVMRAKTHF 248 Query: 259 EDLARGQWQAVIT-ELPPGVSSQRVLEEIEELTNPKLKLGKKSLTPEQQTQKTTILGLLD 317 E+ + A+I ELP V+ + +LE I EL K + G+ D Sbjct: 249 EEYGKENRSAIIVDELPYQVNKKSLLERIAELVRDK-----------------KLEGISD 291 Query: 318 AVRDESGREAPVRLVFEPKSKNQDQTEFMNTLLAQTSLETSASLNLVMIGGDGRPRQKNL 377 +RDES + +R+V E K +N+ +N L QT L+ + +N+V + DG+P+ NL Sbjct: 292 -IRDESDKSG-MRVVIELK-RNEVPEVVLNNLYKQTQLQDTFGMNMVAL-VDGQPKLLNL 347 Query: 378 SDILTEWISFRFETVTRRTQFRMQKVNDRIHILEGREAVLLNIDKVIKIIRESDEPKPAL 437 +L ++S R E VTRRT F ++K +R H+LEG L NID I II+ + P A Sbjct: 348 KQMLECFLSHRREVVTRRTIFELRKARERGHVLEGLAVALANIDDFIAIIKAAPTPPVAK 407 Query: 438 ID--------------------------------------------AFKLSERQAEDILE 453 +D +KLS+ QA++IL+ Sbjct: 408 VDLMSRAWDSSVVREMLARTGEEGVGGVNAFRPENLPKHYGIQPDGLYKLSDDQAQEILQ 467 Query: 454 IRLRQLARLEAIKIQQELAELRNEKTTLQDLLDNPASMKKLVIKEIEGDAKTYG----DA 509 +RL++L LE KI E E+ ++ L D+L P + ++ E+ YG D Sbjct: 468 MRLQRLTGLEQDKIVNEYKEVMSQIADLLDILAKPERVTVIITDELTVAKNEYGIGNKDE 527 Query: 510 RRTIIE-EAERATFEQKVIDEPVTVIISQKGWVRA----------RTGHGHDATQFTFKA 558 RR+ IE A E + + + V +S G++++ R G G A K Sbjct: 528 RRSSIELNATDLGTEDLITPQDMVVTLSHTGYMKSQPITEYRAQKRGGRGKQA--MATKE 585 Query: 559 GDSLYGAFECRTVDNLLAFGSNGRVYTIAVNALP----NARGDGVPVTTLIELASGSSIQ 614 D + F T D +L F + GR+Y + V +P N+RG P+ + L G I Sbjct: 586 DDWIDQLFIANTHDYILCFSNRGRMYWLKVWEVPQGSRNSRGK--PIVNMFPLQDGEKIT 643 Query: 615 HYF-------AGPADTTLLLASDAAAGFIAKASDMFGRVKGGKSFFTLDEGALPLAPTPV 667 P D + +++ SD K G LD+G L + Sbjct: 644 VILPVSGENRTFPEDRYIFMSTSLGTVKKTSLSDFSNPRKAGIIAVDLDDGDF-LIGAAL 702 Query: 668 AADASAVACVSANGRLLVFGLDEMKTLSSGGRGVNLMELEKNEKLVA-AQAISQKGVVVY 726 V S +G+ + F ++++ + RGV M LE+ ++++A A +++ V+ Sbjct: 703 TDGKHDVMLFSDSGKAVRFDENDVRPMGRTARGVRGMNLEEGQQVIALLVAENEQQSVLT 762 Query: 727 GTGNVGKAKEIPLS-------GEKLLAHVGKRARKGRVL 758 T N G K P++ G K + + R G+V+ Sbjct: 763 ATEN-GFGKRTPITEYTRHGRGTKGMIAIQTSERNGKVV 800 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.316 0.133 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,384,021 Number of extensions: 55868 Number of successful extensions: 166 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 163 Number of HSP's successfully gapped: 3 Length of query: 771 Length of database: 1,000,347 Length adjustment: 89 Effective length of query: 682 Effective length of database: 707,092 Effective search space: 482236744 Effective search space used: 482236744 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)