BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1683.p
         (375 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095758|ref|YP_001100833.1| putative ABC transport system m...   561   e-161
gi|134095759|ref|YP_001100834.1| ribosome-associated ATPase [Her...    83   2e-17

>gi|134095758|ref|YP_001100833.1| putative ABC transport system
           membrane protein [Herminiimonas arsenicoxydans]
          Length = 376

 Score =  561 bits (1447), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 287/376 (76%), Positives = 326/376 (86%), Gaps = 1/376 (0%)

Query: 1   MRN-SWANIYRLGIKELWSLLRDPAMLVLIAYTFTLSIYVAATAMPESLHNAAIAIVDND 59
           MR+ S  NIYRLGIKELWSL+RDP MLVLI YTFT++IYVAATAMPE+LHNA IAIVD D
Sbjct: 1   MRSISIVNIYRLGIKELWSLVRDPTMLVLIVYTFTVAIYVAATAMPENLHNAVIAIVDED 60

Query: 60  GSPLSARIASAFYPPHFKVAQLVTAKQADAGLDAGDYTFVLDIPADFQRDVLAGRAPAVQ 119
            SPLSARI S+FYPPHFK  +L++  + D G+D GDYTFVLDIPA+FQRDVLAGRAPA Q
Sbjct: 61  DSPLSARIVSSFYPPHFKTPRLISLAEMDIGMDNGDYTFVLDIPANFQRDVLAGRAPAAQ 120

Query: 120 LNVDATRMSQAFTGNSYIQQMVSNEVTQFVGRTEVTGSTPVGLALRMRFNPNLEQSWFGS 179
           LNVDATRMSQAFTG+ Y+QQ+V+ EV +FV R   + S PV L LRMRFNPNLEQSWFGS
Sbjct: 121 LNVDATRMSQAFTGSGYVQQIVAAEVNEFVQRHRGSTSLPVELNLRMRFNPNLEQSWFGS 180

Query: 180 LMEIINNVTMLSIILTGAALIREREHGTIEHLLVMPVSPAEIMLAKVWSMGAVVALAALA 239
           LMEIIN+VTMLSIILTGAALIREREHGTIEHLLVMPV+PAEIMLAK+W+M  VV LAA  
Sbjct: 181 LMEIINSVTMLSIILTGAALIREREHGTIEHLLVMPVTPAEIMLAKIWAMALVVLLAASV 240

Query: 240 SLLLIVRGALQVPIEGSIALFMLATVLHLFATTSMGIFMATLARSMPQFGMLTVLVLLPL 299
           S+L +V+ AL+VP++GSIALFM  T LHLFATTSMGIFMAT+ARSMPQFGML VLVLLPL
Sbjct: 241 SILFVVQLALRVPVQGSIALFMAVTALHLFATTSMGIFMATVARSMPQFGMLMVLVLLPL 300

Query: 300 QLLSGGSTPRESMPVPVQDIMLAAPTTHFVAAGQAILYRGAGLEVVWPQLLAIFGIGLVL 359
           ++LSGG TPRESMP  VQ +ML APTTHFV+A QAIL+RGAGL+VVWPQ+LAI  IG +L
Sbjct: 301 EMLSGGMTPRESMPWVVQQLMLVAPTTHFVSAAQAILFRGAGLDVVWPQVLAIIVIGALL 360

Query: 360 FVAALGRFRKTISQMA 375
           F+A+L RFRKTIS MA
Sbjct: 361 FMASLRRFRKTISLMA 376


>gi|134095759|ref|YP_001100834.1| ribosome-associated ATPase
           [Herminiimonas arsenicoxydans]
          Length = 931

 Score = 82.8 bits (203), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 93/361 (25%), Positives = 160/361 (44%), Gaps = 39/361 (10%)

Query: 14  KELWSLLRDPAMLVLIAYTFTLSIYVAATAMPESLHNAAIAIVDNDGSPLSAR----IAS 69
           +E   L RDP    L     TL +++    M   + N   A++D D + +S      +A 
Sbjct: 570 RETLELRRDPVRATLALLGTTLLMFIIGYGMNMDVDNLTYAVLDQDQTTVSQNYTLNLAG 629

Query: 70  AFY----PPHFKVAQLVTAKQADAGLDAGDYTFVLDIPADFQRDVLAGRAPAVQLNVDAT 125
           + Y    PP    A+L      D  +  G+ + V++IP+ F RD+  G    V   VD  
Sbjct: 630 SRYFIEKPPVRNHAEL------DRRMRNGELSLVIEIPSGFARDLKRGHGAQVAAWVDGA 683

Query: 126 RMSQAFTGNSYIQQMVS---NEVTQFVGRTEVTGSTPVGLALRMRFNPNLEQSWFGSLME 182
             ++A T   Y+Q M +    ++ Q+  R  V       +  R R+NP++      SLM 
Sbjct: 684 MPARAETVRGYVQAMHALWLVDMAQY--RLGVALPVASQMETRFRYNPDVR-----SLMA 736

Query: 183 IINNVT-----MLSIILTGAALIREREHGTIEHLLVMPVSPAEIMLAKVWSMGAVVALAA 237
           ++  V      M+  +LT  +++RE+E G+I +L V PV+  E +L K       +ALA 
Sbjct: 737 MVPAVIPMLLMMIPSMLTALSVVREKELGSIINLYVTPVTRIEFLLGKQLP---YIALAM 793

Query: 238 LASLLLIVRG--ALQVPIEGSIALFMLATVLHLFATTSMGIFMATLARSMPQFGMLTVL- 294
              L+L +       VP++G      +A +L + ++T MG+  +T  +S      +T++ 
Sbjct: 794 FNFLILTLLSVTVFGVPLKGDFITLAVAALLCVISSTGMGLLASTFTKSQISAMFVTMIG 853

Query: 295 VLLPLQLLSGGSTPRESMPVPVQDIMLAAPTTHFVAAGQAILYRGAG----LEVVWPQLL 350
            +LP    +G   P  S+      I    P THF+   + +  +       +   WP L+
Sbjct: 854 TILPCVQFAGLLNPVSSLEGVGAFIGSIYPATHFLTISRGVFSKALDSSSLMSSFWPLLI 913

Query: 351 A 351
           A
Sbjct: 914 A 914


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.325    0.136    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 634,367
Number of extensions: 23623
Number of successful extensions: 101
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 2
Length of query: 375
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 292
Effective length of database: 726,862
Effective search space: 212243704
Effective search space used: 212243704
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 129 (54.3 bits)