BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1682.p (917 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095759|ref|YP_001100834.1| ribosome-associated ATPase [Her... 1352 0.0 gi|134095536|ref|YP_001100611.1| drug ABC transporter ATP-bindin... 144 2e-35 gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 113 4e-26 gi|134096229|ref|YP_001101304.1| ABC transporter ATP-binding pro... 113 5e-26 gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC trans... 108 2e-24 >gi|134095759|ref|YP_001100834.1| ribosome-associated ATPase [Herminiimonas arsenicoxydans] Length = 931 Score = 1352 bits (3499), Expect = 0.0, Method: Compositional matrix adjust. Identities = 674/926 (72%), Positives = 774/926 (83%), Gaps = 24/926 (2%) Query: 12 VARLTGVSLHYGQRCALENVSLDIPAGRMVGLIGPDGVGKSSLLSLVAGARALQAGEVSV 71 V RL + L YG+ AL ++SLDIPA MVGLIGPDGVGKSSLL+L AGAR +Q G V Sbjct: 8 VIRLADIGLRYGKTVALADISLDIPAQCMVGLIGPDGVGKSSLLALAAGARKMQQGSADV 67 Query: 72 LGGDMRQAEHRQQVCPRIAYMPQGLGKNLYPTLSVEENLQFFARLFGQGAAERRRRIDEL 131 LGGDMR+ HR VCPRIAYMPQGLGKNLYPTLSVEENLQFFARLFG AAERRRRID L Sbjct: 68 LGGDMRRKRHRDAVCPRIAYMPQGLGKNLYPTLSVEENLQFFARLFGHDAAERRRRIDSL 127 Query: 132 TAGTGLSAFLARPAGKLSGGMKQKLGLCCSLIHDPDLLILDEPTTGVDPLSRAQFWDLIA 191 T TGL FL RP GKLSGGMKQKLGLCC+LIHDPDLLILDEPTTGVDPL+RAQFW LIA Sbjct: 128 TRSTGLFPFLTRPVGKLSGGMKQKLGLCCALIHDPDLLILDEPTTGVDPLARAQFWSLIA 187 Query: 192 RIRAQRPGMSVIVATAYMEEADRFDWLVAMDAGKVLATGTPAELHARTGTASLEEAFIAL 251 IR QRP +SVIVATAYM+EA FDWLVAMD G+VLATG P EL A+TG+A LE AFIAL Sbjct: 188 GIRQQRPQISVIVATAYMDEAQGFDWLVAMDGGRVLATGAPQELLAQTGSADLEAAFIAL 247 Query: 252 LPEEKRRGHQAVQVTPLDDSNAAEVAIEAKGLTMRFGDFVAVDHVDFRIRRGEIFGFLGS 311 LPEEK+RGHQAV++ PL AEVAIEA+ LTMRFGDF AVDHV+FRIRRGEIFGF+GS Sbjct: 248 LPEEKKRGHQAVEIQPLALGADAEVAIEARDLTMRFGDFTAVDHVNFRIRRGEIFGFIGS 307 Query: 312 NGCGKSTTMKMLTGLLQASQGQAWLFGREVDPRDMTTRARVGYMSQAFSLYGELSVRQNL 371 NGCGK+TTMK+LTGLL AS+G+AWLFG EVDP D+ TR RVGYMSQ+FSLY ELSV QNL Sbjct: 308 NGCGKTTTMKVLTGLLAASEGRAWLFGHEVDPHDIATRRRVGYMSQSFSLYSELSVMQNL 367 Query: 372 VLHARLYRLPEDQIAARTEEMATRFGLLDVMDSLPESLPLGIRQRLSLAVAMVHKPELLI 431 VLHARL+ +PE ++AAR ++M TRFGL + +D+LP LPLG+RQRLSLAVAMVH PELLI Sbjct: 368 VLHARLFNVPEAEVAARAQQMLTRFGLEEEIDALPNKLPLGMRQRLSLAVAMVHGPELLI 427 Query: 432 LDEPTSGVDPIARDLFWQLMIDLARRDKVTIFISTHFMNEAQRCDRISLMHAGRVLVSAT 491 LDEPTSGVDP+ARD FW+L+I+L+RRD+VTIFISTHFMNEA+RCDRISLMHAG+VLVS T Sbjct: 428 LDEPTSGVDPVARDNFWRLLIELSRRDRVTIFISTHFMNEAERCDRISLMHAGKVLVSDT 487 Query: 492 PEELVRQRGAASLEQAFIGYLEEAAGKGDPVPSPAQNVISAPQT------AKPRP-GRLR 544 P +LV QR +LEQAFI YLE+A G VP+ A Q+ AK RP GR+ Sbjct: 488 PAQLVAQRQVDTLEQAFIAYLEDATGV---VPAAKDETDIAAQSGTATGRAKARPEGRVE 544 Query: 545 T--------------SLGRALSYSQRESLELRRDPVRATLALLGTAILMFIIGYGINLDV 590 S+GRALSY RE+LELRRDPVRATLALLGT +LMFIIGYG+N+DV Sbjct: 545 DAAAPHAAARPQRSFSIGRALSYMWRETLELRRDPVRATLALLGTTLLMFIIGYGMNMDV 604 Query: 591 ENLSYAVLDRDQTGLSQNYALNLSGSRYFIEKPPITDYQDLDRRMRSGDISLAIEIPPGF 650 +NL+YAVLD+DQT +SQNY LNL+GSRYFIEKPP+ ++ +LDRRMR+G++SL IEIP GF Sbjct: 605 DNLTYAVLDQDQTTVSQNYTLNLAGSRYFIEKPPVRNHAELDRRMRNGELSLVIEIPSGF 664 Query: 651 ARDIARGKPVEVGAWVDGAMPTRAETVRGYVQGMHLLWLADMATHRLGQSMGQAATIETR 710 ARD+ RG +V AWVDGAMP RAETVRGYVQ MH LWL DMA +RLG ++ A+ +ETR Sbjct: 665 ARDLKRGHGAQVAAWVDGAMPARAETVRGYVQAMHALWLVDMAQYRLGVALPVASQMETR 724 Query: 711 YRYNPDVKSLPAMVPAIIPLLLMMIPAMLTALSVVREKELGSILNLYVTPVTRTEFLLGK 770 +RYNPDV+SL AMVPA+IP+LLMMIP+MLTALSVVREKELGSI+NLYVTPVTR EFLLGK Sbjct: 725 FRYNPDVRSLMAMVPAVIPMLLMMIPSMLTALSVVREKELGSIINLYVTPVTRIEFLLGK 784 Query: 771 QLPYLLLGMLNFAMLTVLAVTVFGVPVKGSLLTLTLAALIFIICSTGFGLLASTFTNSQI 830 QLPY+ L M NF +LT+L+VTVFGVP+KG +TL +AAL+ +I STG GLLASTFT SQI Sbjct: 785 QLPYIALAMFNFLILTLLSVTVFGVPLKGDFITLAVAALLCVISSTGMGLLASTFTKSQI 844 Query: 831 AALFVTMIGTIIPCVQFAGLLNPVSSLEGMGALIGQVYPATHFLTISRGVFSKALDASDL 890 +A+FVTMIGTI+PCVQFAGLLNPVSSLEG+GA IG +YPATHFLTISRGVFSKALD+S L Sbjct: 845 SAMFVTMIGTILPCVQFAGLLNPVSSLEGVGAFIGSIYPATHFLTISRGVFSKALDSSSL 904 Query: 891 ASSFWPLTLAAPVILGLSVLLLKKQE 916 SSFWPL +AAPVI+G ++LLL+KQE Sbjct: 905 MSSFWPLLIAAPVIVGAAILLLRKQE 930 >gi|134095536|ref|YP_001100611.1| drug ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 241 Score = 144 bits (362), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 79/214 (36%), Positives = 125/214 (58%), Gaps = 2/214 (0%) Query: 303 GEIFGFLGSNGCGKSTTMKMLTGLLQASQGQAWLFGREVDPRDMTTRARVGYMSQAFSLY 362 GE+FG LG NG GK+T +KML LL+ S G A + G +V R +GY+ QA S Sbjct: 6 GEVFGLLGRNGAGKTTVIKMLATLLEPSSGHAKVGGFDVVQNAARVRRIIGYVPQALSAD 65 Query: 363 GELSVRQNLVLHARLYRLPEDQIAARTEEMATRFGLLDVMDSLPESLPLGIRQRLSLAVA 422 G+L+ +NL + A+LY +P + R + L V +L ++ G+ +RL +A + Sbjct: 66 GDLTGYENLSIFAKLYDIPRAERKVRIRDALAFMSLSAVSRNLVKTYSGGMIRRLEIAQS 125 Query: 423 MVHKPELLILDEPTSGVDPIARDLFWQLMIDLARRDKVTIFISTHFMNEAQR-CDRISLM 481 +H P +L LDEPT G+DP+AR W+ + L + IF++TH++ EA+R C+R+++M Sbjct: 126 TLHHPRVLFLDEPTVGLDPVARISVWEQLEKLQAQFGSAIFLTTHYLEEAERLCNRVAIM 185 Query: 482 HAGRVLVSATPEELVRQRG-AASLEQAFIGYLEE 514 + G++ TP EL G A+ E+AF Y ++ Sbjct: 186 NRGKITAIGTPAELSASVGPNANFEEAFEYYTQD 219 Score = 132 bits (333), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 85/218 (38%), Positives = 125/218 (57%), Gaps = 7/218 (3%) Query: 33 LDIPAGRMVGLIGPDGVGKSSLLSLVAGARALQAGEVSVLGGDMRQAEHRQQVCPRIAYM 92 + IP G + GL+G +G GK++++ ++A +G V G D+ Q R V I Y+ Sbjct: 1 MSIPPGEVFGLLGRNGAGKTTVIKMLATLLEPSSGHAKVGGFDVVQNAAR--VRRIIGYV 58 Query: 93 PQGLGKNLYPTLSVEENLQFFARLFGQGAAERRRRIDELTAGTGLSAFLARPAGKLSGGM 152 PQ L + L+ ENL FA+L+ AER+ RI + A LSA SGGM Sbjct: 59 PQALSAD--GDLTGYENLSIFAKLYDIPRAERKVRIRDALAFMSLSAVSRNLVKTYSGGM 116 Query: 153 KQKLGLCCSLIHDPDLLILDEPTTGVDPLSRAQFWDLIARIRAQRPGMSVIVATAYMEEA 212 ++L + S +H P +L LDEPT G+DP++R W+ + +++AQ G ++ + T Y+EEA Sbjct: 117 IRRLEIAQSTLHHPRVLFLDEPTVGLDPVARISVWEQLEKLQAQF-GSAIFLTTHYLEEA 175 Query: 213 DRFDWLVA-MDAGKVLATGTPAELHARTG-TASLEEAF 248 +R VA M+ GK+ A GTPAEL A G A+ EEAF Sbjct: 176 ERLCNRVAIMNRGKITAIGTPAELSASVGPNANFEEAF 213 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 113 bits (283), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 84/293 (28%), Positives = 140/293 (47%), Gaps = 13/293 (4%) Query: 276 VAIEAKGLTMRFGDFVAVDHVDFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLQASQGQAW 335 ++IE K + +FG+FVA++ V GE+ LG +GCGK+T ++++ GL Q GQ Sbjct: 1 MSIEVKNINKKFGNFVALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVL 60 Query: 336 LFGREVDPRDMTTRARVGYMSQAFSLYGELSVRQNLVLHARLY----RLPEDQIAARTEE 391 L G + R + R +VG++ Q ++L+ ++V +N+ R+ R E I + + Sbjct: 61 LDGEDASARHVRER-QVGFVFQHYALFKHMTVFENIAFGLRVRPAATRPSESVIKEKVTK 119 Query: 392 MATRFGLLDVMDSLPESLPLGIRQRLSLAVAMVHKPELLILDEPTSGVDPIARDLFWQLM 451 + L + D P L G RQR++LA A+ +P +L+LDEP +D R + + Sbjct: 120 LLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWL 179 Query: 452 IDLARRDKVTIFISTHFMNEA-QRCDRISLMHAGRVLVSATPEELVRQRGAASLEQAFIG 510 L VT TH EA + D+I LM+ G V P++ V A+ F+G Sbjct: 180 RRLHDELHVTSIFVTHDQEEALEVADQIVLMNKGHVEQIGAPKD-VYNNPASPFVYGFLG 238 Query: 511 YLEEAAGKGDPVPSPAQNVISAPQTAKPRPGRLRTSLGRALSYSQRESLELRR 563 + G+ + V+ + A P +T R + Y + LE+ R Sbjct: 239 NVNLFRGR------VHEGVLQSSGIAFDAPDHAKTQDARGIGYVRPHDLEVDR 285 Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 65/230 (28%), Positives = 112/230 (48%), Gaps = 17/230 (7%) Query: 15 LTGVSLHYGQRCALENVSLDIPAGRMVGLIGPDGVGKSSLLSLVAGARALQAGEVSVLGG 74 + ++ +G AL +VSL+ PAG + L+GP G GK++LL ++AG G+V + G Sbjct: 5 VKNINKKFGNFVALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLLDGE 64 Query: 75 D--MRQAEHRQQVCPRIAYMPQGLGKNLYPTLSVEENLQFFARLFGQGAAER------RR 126 D R RQ + ++ Q L+ ++V EN+ F R+ + AA R + Sbjct: 65 DASARHVRERQ-----VGFVFQHYA--LFKHMTVFENIAFGLRV--RPAATRPSESVIKE 115 Query: 127 RIDELTAGTGLSAFLARPAGKLSGGMKQKLGLCCSLIHDPDLLILDEPTTGVDPLSRAQF 186 ++ +L L R +LSGG +Q++ L +L +P +L+LDEP +D R + Sbjct: 116 KVTKLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKEL 175 Query: 187 WDLIARIRAQRPGMSVIVATAYMEEADRFDWLVAMDAGKVLATGTPAELH 236 + R+ + S+ V E + D +V M+ G V G P +++ Sbjct: 176 RRWLRRLHDELHVTSIFVTHDQEEALEVADQIVLMNKGHVEQIGAPKDVY 225 >gi|134096229|ref|YP_001101304.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 303 Score = 113 bits (282), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 88/302 (29%), Positives = 147/302 (48%), Gaps = 24/302 (7%) Query: 277 AIEAKGLTMRFGDFVAVDHVDFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLQASQGQAWL 336 AI+ + + A++ V I GE FG LG NG GK+T + +L GL +A G + Sbjct: 3 AIQINQVEKSYRALKALNGVSLAIEEGEFFGLLGPNGAGKTTLISILAGLNRADAGSIKV 62 Query: 337 FGREVDPRDMTTRARVGYMSQAFSLYGELSVRQNLVLHARLYRLPEDQIAARTEEMATRF 396 G +V TR +G + Q +VR+ L + + Y L + A +E+ Sbjct: 63 HGYDVVTDYRQTRKLLGVVPQELVFDPFFTVRETLRMQSGYYGLKNND--AWIDEVMHHL 120 Query: 397 GLLDVMDSLPESLPLGIRQRLSLAVAMVHKPELLILDEPTSGVDPIARDLFWQLMIDLAR 456 L D+ +L G+++R+ +A A+VHKP +++LDEPT+GVD R W+ + L Sbjct: 121 DLTGKADANMRALSGGMKRRVLVAQALVHKPPVIVLDEPTAGVDVELRQTLWKFISRL-N 179 Query: 457 RDKVTIFISTHFMNEAQR-CDRISLMHAGRVLVSATPEELVRQRGAASLEQAFIGYLEEA 515 R+ T+ ++TH++ EAQ C+R++++ AG+V+ L+++ + + L A Sbjct: 180 REGHTVVLTTHYLEEAQALCNRVAMLKAGQVVALDATSTLIKRIAGSQM------VLRIA 233 Query: 516 AGKGDPVPSPAQNVISAPQTAKPRPGRLRTSLGRALSYSQRESLELRRDPVRATLALLGT 575 +G P +N++ P+ +P G T R YS E P+ A L L G Sbjct: 234 SG---TFPDELKNLLLHPE--EPAFGNQYTL--RVNEYSDVE-------PILAKLRLSGV 279 Query: 576 AI 577 I Sbjct: 280 VI 281 Score = 108 bits (270), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 85/260 (32%), Positives = 127/260 (48%), Gaps = 20/260 (7%) Query: 14 RLTGVSLHYGQRCALENVSLDIPAGRMVGLIGPDGVGKSSLLSLVAGARALQAGEVSVLG 73 ++ V Y AL VSL I G GL+GP+G GK++L+S++AG AG + V G Sbjct: 5 QINQVEKSYRALKALNGVSLAIEEGEFFGLLGPNGAGKTTLISILAGLNRADAGSIKVHG 64 Query: 74 GDMRQAEHRQQVCPRIAYMPQGLGKNLYPTLSVEENLQFFARLFGQGAAERRRRIDELTA 133 D+ +Q + +PQ L + P +V E L+ + +G IDE+ Sbjct: 65 YDV--VTDYRQTRKLLGVVPQELVFD--PFFTVRETLRMQSGYYG--LKNNDAWIDEVMH 118 Query: 134 GTGLSAFLARPAGKLSGGMKQKLGLCCSLIHDPDLLILDEPTTGVDPLSRAQFWDLIARI 193 L+ LSGGMK+++ + +L+H P +++LDEPT GVD R W I+R+ Sbjct: 119 HLDLTGKADANMRALSGGMKRRVLVAQALVHKPPVIVLDEPTAGVDVELRQTLWKFISRL 178 Query: 194 RAQRPGMSVIVATAYMEEADRFDWLVAM-DAGKVLA-----------TGTPAELHARTGT 241 R G +V++ T Y+EEA VAM AG+V+A G+ L +GT Sbjct: 179 --NREGHTVVLTTHYLEEAQALCNRVAMLKAGQVVALDATSTLIKRIAGSQMVLRIASGT 236 Query: 242 ASLEEAFIALLPEEKRRGHQ 261 E + L PEE G+Q Sbjct: 237 FPDELKNLLLHPEEPAFGNQ 256 >gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC transporter ATP-binding subunit [Herminiimonas arsenicoxydans] Length = 366 Score = 108 bits (269), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 67/213 (31%), Positives = 107/213 (50%), Gaps = 8/213 (3%) Query: 278 IEAKGLTMRFGDFVAVDHVDFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLQASQGQAWLF 337 +E + LT RFGD VD++ I GE F LG +GCGK+T ++M+ G + G+ L Sbjct: 4 LEIRNLTRRFGDNTVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDEPDAGKILLD 63 Query: 338 GRE---VDPRDMTTRARVGYMSQAFSLYGELSVRQNLVLHARLYRLPEDQIAARTEEMAT 394 G + V P R + Q ++L+ ++V N+ + P+ +I + +E Sbjct: 64 GVDLTGVPPEQRVVRT----VFQNYALFPHMTVAGNIAFPLEMANTPKSEIKQKVDEALE 119 Query: 395 RFGLLDVMDSLPESLPLGIRQRLSLAVAMVHKPELLILDEPTSGVDPIARDLFWQLMIDL 454 L P L G RQR+S+A A+V +P+LL+LDEP S +D R+ +I+L Sbjct: 120 DVRLTGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIELINL 179 Query: 455 ARRDKVTIFISTHFMNEA-QRCDRISLMHAGRV 486 + +T TH EA RI++M+ G + Sbjct: 180 QKEVGITFVYVTHDQAEALALSHRIAVMNKGNI 212 Score = 92.0 bits (227), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 63/218 (28%), Positives = 109/218 (50%), Gaps = 9/218 (4%) Query: 22 YGQRCALENVSLDIPAGRMVGLIGPDGVGKSSLLSLVAGARALQAGEVSVLGGDMRQAEH 81 +G ++N+SL I AG L+GP G GK++LL ++AG AG++ + G D+ Sbjct: 13 FGDNTVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDEPDAGKILLDGVDLTGVPP 72 Query: 82 RQQVCPRIAYMPQGLGKNLYPTLSVEENLQFFARLFGQGAAERRRRIDELTAGTGLSAFL 141 Q+V R + L +P ++V N+ F + +E ++++DE L+ F Sbjct: 73 EQRVV-RTVFQNYAL----FPHMTVAGNIAFPLEMANTPKSEIKQKVDEALEDVRLTGFA 127 Query: 142 ARPAGKLSGGMKQKLGLCCSLIHDPDLLILDEPTTGVDPLSRAQFWDLIARIRAQRP-GM 200 AR +LSGG +Q++ + +L+ P LL+LDEP + +D R Q I I Q+ G+ Sbjct: 128 ARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQ--IELINLQKEVGI 185 Query: 201 SVIVATAYMEEADRFDWLVA-MDAGKVLATGTPAELHA 237 + + T EA +A M+ G + P +++ Sbjct: 186 TFVYVTHDQAEALALSHRIAVMNKGNIEQLDEPTRIYS 223 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.322 0.138 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,676,774 Number of extensions: 70090 Number of successful extensions: 507 Number of sequences better than 1.0e-08: 46 Number of HSP's gapped: 394 Number of HSP's successfully gapped: 88 Length of query: 917 Length of database: 1,000,347 Length adjustment: 90 Effective length of query: 827 Effective length of database: 703,797 Effective search space: 582040119 Effective search space used: 582040119 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 133 (55.8 bits)