BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1681.p
         (358 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095760|ref|YP_001100835.1| putative ABC transport system, ...   441   e-125

>gi|134095760|ref|YP_001100835.1| putative ABC transport system,
           membrane protein [Herminiimonas arsenicoxydans]
          Length = 355

 Score =  441 bits (1135), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 246/352 (69%), Positives = 292/352 (82%)

Query: 7   KKPLLAAALAVILAGGAYFAWQRLHHGGPGEGFASGNGRIEATEVDVATKLGGRVDAILV 66
           KK L+  A+ +I    A +AW  L   GPG GF SGNGRIEATEVDV+TKLGGRV  ILV
Sbjct: 4   KKQLIPIAIVLIAVVAAAYAWFTLRDTGPGAGFISGNGRIEATEVDVSTKLGGRVLDILV 63

Query: 67  NEGDFVSVGQPLAHMQVLSLQAQRDEAQARQQQALSAVASAEAQVAVRESDYQAALAQTA 126
            EGDFVS GQPLAHMQ+ +L A  DEA+ARQQQA++A+ASAEA VA+R+SD QAA A   
Sbjct: 64  KEGDFVSAGQPLAHMQIDTLTAMVDEARARQQQAVAAIASAEALVAMRQSDKQAAQALVV 123

Query: 127 QRESELDAARRRLARSEVLVKEGASSLQEVDDDRARVQGMAAAVTAAKAQVTAAQAAVAA 186
           QR+SELDAA+RRL RS+ L +EGASS QE+DDDRAR + + AA+ AA AQV AAQ+A++A
Sbjct: 124 QRQSELDAAQRRLTRSQTLAQEGASSQQELDDDRARERSVQAALVAASAQVEAAQSAISA 183

Query: 187 ARTQVSGAKSTVTAAVATVQRIKVDIDDSTLTAPRAGRVQYRIAQPGEVLGAGGKLLNLV 246
           A+TQV+GA++T  AA A+V RI+ DI+DS LTAPR+GRVQYRIA+ GEV+GAGGK+LNLV
Sbjct: 184 AQTQVAGARATAVAAEASVARIQADINDSVLTAPRSGRVQYRIAEAGEVIGAGGKVLNLV 243

Query: 247 DLSDVYMTFFVPEAVAGKLALGSDARIVLDAAPQYVIPARISFVASTAQFTPKTVETASE 306
           DLSDVYMTFFVPE + GKLAL S+  IVLDAAPQYVIPAR+SFVASTAQFTPKTVETASE
Sbjct: 244 DLSDVYMTFFVPETIVGKLALDSEVHIVLDAAPQYVIPARLSFVASTAQFTPKTVETASE 303

Query: 307 RQKLMFRVKAQIDPALLQQHLTLVKTGLPGVAWVRTDKTRAWPEQLAVKVPQ 358
           RQKLMFRV+AQID ALL++H+ LVKTGLPGVAW++ D   AWP  LAVK+P+
Sbjct: 304 RQKLMFRVRAQIDRALLEKHVKLVKTGLPGVAWLKLDPKSAWPPALAVKLPE 355


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.316    0.128    0.347 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 523,244
Number of extensions: 18801
Number of successful extensions: 103
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 3
Length of query: 358
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 275
Effective length of database: 726,862
Effective search space: 199887050
Effective search space used: 199887050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)