BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1675.p
         (281 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094120|ref|YP_001099195.1| putative transcriptional regula...    77   7e-16
gi|134096571|ref|YP_001101646.1| LysR family transcriptional reg...    56   2e-09

>gi|134094120|ref|YP_001099195.1| putative transcriptional regulator
           [Herminiimonas arsenicoxydans]
          Length = 284

 Score = 77.4 bits (189), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 74/271 (27%), Positives = 129/271 (47%), Gaps = 18/271 (6%)

Query: 5   LDLDAVQAFVLAAELQSFTRAAEALQSTQSAVSLKLKKLEERLGRRLLERTPRRVRLSSQ 64
           LD   +++FV   +  SFTRAA+++  TQS +S ++++LE ++G  LL R+ R V  + +
Sbjct: 2   LDPVLLRSFVAVVDTGSFTRAADSVHLTQSTISQQIRRLEMQVGCDLLNRSGRYVTTTLE 61

Query: 65  GQQFLPVARELLAAHERALEQLEE--GPLRFAVGISDHVAGASLPRALAQVHGVDPGVLV 122
           G++ L  A  +    + A+EQ+ +  G     +G+ +   G +L   L+        V +
Sbjct: 62  GERLLRYAHRIAQLMDEAMEQIAQSAGKGEVRLGVPEDFVGRALTPTLSAFIDTYSAVRL 121

Query: 123 EVRVASSHDLMPLYEQGELDAVIVRREPRQRGGKLVMQERIGWF---AHPEAQCWAGPAL 179
           EV    SH+L   +++GELD  ++++      G     ER+ W    + P A     P  
Sbjct: 122 EVSSGMSHELWQRFQRGELDLALIKQRVGSMPGLASWSERLCWVESRSRPNAMHDPIP-- 179

Query: 180 RVATFSSTCGIRELALRRLDEAGIDWIEVFIGGGILAVGAAVSAGLAVSALLHRSAPPAA 239
            +  F      R   +  LD AG+ W   ++   + +V AAV AGL V+ L     P   
Sbjct: 180 -LVVFPIGGLYRSEMMHALDAAGLRWRITYVSASLASVSAAVEAGLGVTLL-----PRRL 233

Query: 240 VEVGERL-----GLPSLPLAQVMLHSRLKEP 265
           +  G R+     G   +P  ++ LH + + P
Sbjct: 234 LAAGHRMLDAASGFKVVPPLELALHGQTEIP 264


>gi|134096571|ref|YP_001101646.1| LysR family transcriptional
           regulator [Herminiimonas arsenicoxydans]
          Length = 319

 Score = 56.2 bits (134), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 4/145 (2%)

Query: 5   LDLDAVQAFVLAAELQSFTRAAEALQSTQSAVSLKLKKLEERLGRRLLERTPRRVRLSSQ 64
           LDL+ ++ F      Q+ TRAA  L  TQ AVS  L++L + LG  L+ RT   V+ +S+
Sbjct: 6   LDLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDALGDELVIRTAHGVKPTSR 65

Query: 65  GQQFLPVARELLAAHERALE----QLEEGPLRFAVGISDHVAGASLPRALAQVHGVDPGV 120
             +  PV R  L+  E A+      +      F + ++D  A   LP  +  +    PG+
Sbjct: 66  ATELWPVVRRALSDLETAVTPDTFDVSRATTTFRMAMADATAALWLPFLVRAIEKEAPGL 125

Query: 121 LVEVRVASSHDLMPLYEQGELDAVI 145
            V +   ++ +  P+  +G++D  I
Sbjct: 126 NVRMVPLTTREPRPMLLRGDIDLAI 150


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.134    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 375,522
Number of extensions: 11786
Number of successful extensions: 63
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 4
Length of query: 281
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 200
Effective length of database: 733,452
Effective search space: 146690400
Effective search space used: 146690400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)