BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1671.p (398 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094032|ref|YP_001099107.1| putative aminotransferase [Herm... 644 0.0 gi|134095984|ref|YP_001101059.1| transcription regulator GntR [H... 159 3e-40 gi|134094028|ref|YP_001099103.1| bifunctional transcriptional re... 101 5e-23 gi|134093921|ref|YP_001098996.1| MocR family transcriptional reg... 92 6e-20 gi|134094271|ref|YP_001099346.1| putative aspartate aminotransfe... 66 2e-12 >gi|134094032|ref|YP_001099107.1| putative aminotransferase [Herminiimonas arsenicoxydans] Length = 397 Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust. Identities = 307/398 (77%), Positives = 347/398 (87%), Gaps = 1/398 (0%) Query: 1 MKLENPAPLQWQFSQRAEAMKSSAIREILKVTMRPDITSFAGGLPSPLTFPVEHMKVAFD 60 MK+ENP P++WQF+QRAE ++SS IREILK+TMRPDI SFAGGLPSP TFPVEHMK AFD Sbjct: 1 MKIENPTPIKWQFAQRAEQLQSSVIREILKITMRPDIISFAGGLPSPETFPVEHMKAAFD 60 Query: 61 RVLSQQGKMALQYGPTDGYLPLREWIAASLSSDGAQITPEQVLMVSGSQQGLDLLGKVLI 120 VLSQQGK+ALQYGP+DGY PLREWIA SLS G ITP+QVLMVSGSQQ LDLLGKVLI Sbjct: 61 TVLSQQGKIALQYGPSDGYAPLREWIADSLSIPGVTITPDQVLMVSGSQQALDLLGKVLI 120 Query: 121 DEGSKVLVETPSYLGALQAFALYGAKFESVPSDESGLQPETIEAIAAGARMLYSLPNFQN 180 +E SKVLVETPSYLGALQAF++Y +F S+P+D+ GL PE + IA GAR+LY+LPNFQN Sbjct: 121 EEHSKVLVETPSYLGALQAFSVYQPEFVSIPTDDFGLLPEEVAKIADGARLLYALPNFQN 180 Query: 181 PTGRTLPVERRLKLVETCARLGLPLIEDDPYGALSYRNAPLPKMLSMNPAGVIYMGSFSK 240 PTGRT+ VERR LVETCARLGLPLIEDDPYGALSYR PLPKML+MNP GVIY+GSFSK Sbjct: 181 PTGRTMSVERRFALVETCARLGLPLIEDDPYGALSYRGEPLPKMLTMNPNGVIYLGSFSK 240 Query: 241 VLTPGIRLGYVVAPRPLILKMEQAKQATDLHTAQLTQMVVYEAIKDGFLDQHVPTIRKLY 300 VLTPGIRLGYVVAP PL+ K+EQAKQA DLHT+QLTQMVVYEAIKDGFL++H+P+IR LY Sbjct: 241 VLTPGIRLGYVVAPVPLVRKLEQAKQAADLHTSQLTQMVVYEAIKDGFLEKHIPSIRTLY 300 Query: 301 GDQCQAMLDALQQYFPASCSWSKPEGGMFIWVTLPEHIDAGALLNEAVEQEKVAFVPGAP 360 +QCQ MLDAL ++FPA +W+KPEGGMFIWVTLPEHID LL E++ Q VAFVPGAP Sbjct: 301 ANQCQVMLDALTEFFPAGVTWNKPEGGMFIWVTLPEHIDCMKLLEESITQ-NVAFVPGAP 359 Query: 361 FYANVAQKNTLRLSFVTVPPEQIRAGVERLGKLIAAKL 398 FYAN QKNTLRLSFVTVPPE+IR GV +L KLIAAK+ Sbjct: 360 FYANEPQKNTLRLSFVTVPPEKIREGVAKLAKLIAAKI 397 >gi|134095984|ref|YP_001101059.1| transcription regulator GntR [Herminiimonas arsenicoxydans] Length = 470 Score = 159 bits (402), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 110/382 (28%), Positives = 182/382 (47%), Gaps = 16/382 (4%) Query: 22 SSAIREILKVTMRPDITSFAGGLPSPLTFPVEHMKVAFDRVLSQQGKMALQYGPTDGYLP 81 S + E+L+ + D+ PSPL FP+ + A + Q + T G Sbjct: 93 SELVFEVLESSKMRDVVPLGSAFPSPLLFPLARLAKAMASSVQQLDPWSTVDDLTPGNPQ 152 Query: 82 LREWIAASLSSDGAQITPEQVLMVSGSQQGLDLLGKVLIDEGSKVLVETPSYLGALQAFA 141 LR IA +DG + P+++++ +G+ L+L + G VLVE+P++ ALQ+ Sbjct: 153 LRRQIALRYRADGLHVQPDEIVITNGALDALNLCLIAVTRPGDAVLVESPTFYAALQSLE 212 Query: 142 LYGAKFESVPSDESGLQPETIEAIAAGARML--------YSLPNFQNPTGRTLPVERRLK 193 G + VP+ P +AA AR+L + + NFQNP G +P E++ Sbjct: 213 RNGLQAIEVPT-----HPREGMDLAALARVLERHQPKACWLMTNFQNPLGSLMPDEKKRD 267 Query: 194 LVETCARLGLPLIEDDPYGALSYRNA-PLPKMLSMNPAGVIYMGSFSKVLTPGIRLGYVV 252 LV ++ +PLIEDD YG L + + P P V++ SFSK L PG R+G+ Sbjct: 268 LVALLSQHDIPLIEDDVYGELYFGDKRPAPAKAYDTKGLVMHCSSFSKCLAPGYRVGW-A 326 Query: 253 APRPLILKMEQAKQATDLHTAQLTQMVVYEAIKDGFLDQHVPTIRKLYGDQCQAMLDALQ 312 AP + + K T L + Q + ++ G D+H+ +R Q ++A+ Sbjct: 327 APGRYTRAVARHKLTTTLAASAPAQAALATYLEKGGYDRHLRQLRHTLALQQTQFMEAIA 386 Query: 313 QYFPASCSWSKPEGGMFIWVTLPEHIDAGALLNEAVEQEKVAFVPGAPFYANVAQKNTLR 372 +YFP ++P GG F+WV LP ++A L +A+ ++ PG F A+ N +R Sbjct: 387 RYFPPGTQATRPRGGYFLWVELPHAVNALTLHRQALSH-GISIAPGPIFSAHQGFTNCIR 445 Query: 373 LSFVTVPPEQIRAGVERLGKLI 394 L++ + A + LG+L+ Sbjct: 446 LNYGHAWDARTEAALATLGQLV 467 >gi|134094028|ref|YP_001099103.1| bifunctional transcriptional regulator/amino transferase [Herminiimonas arsenicoxydans] Length = 486 Score = 101 bits (252), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 89/341 (26%), Positives = 154/341 (45%), Gaps = 25/341 (7%) Query: 61 RVLSQQGKMALQYGPTDGYLPLREWIAASLSSDGAQITPEQVLMVSGSQQGLDLLGKVLI 120 R +S+Q + LQYG G+LPLR+ + L+ TP+Q + G Q LDL+ + I Sbjct: 154 RAVSRQ-NLPLQYGNPQGFLPLRQQLQLKLAELEISATPDQFVTTLGVTQALDLVARHYI 212 Query: 121 DEGSKVLVETPSYLGALQAFALYGAKFESVPSDESGLQPETIEAIAAGARMLYSLPN--F 178 G + V+ P++ +FA+ GAK +P G + +AA R + N Sbjct: 213 QPGDTIFVDDPAWFLMFGSFAMLGAKVVGIPRLPDGPDIAQLAELAALHRPKLFVINSVL 272 Query: 179 QNPTGRTLPVERRLKLVETCARLGLPLIEDDPYGALSYRNA--PLPKMLSMNPAG-VIYM 235 NPT +L + ++++ + ++EDD Y + P ++ +++ VIY+ Sbjct: 273 HNPTSTSLSAAKAFQVLKIAEQYDFMIVEDDIYCDMHPGTTVQPATRIAALDQLNRVIYL 332 Query: 236 GSFSKVLTPGIRLGYVVAPRPLILKMEQAKQATDLHTAQLTQMVVYEAIKDGFLDQHVPT 295 G FSK L +R+G++ + + K T L T ++T+ VVY + +G +H Sbjct: 333 GGFSKTLAANLRVGFIATSPEIAKHLCDRKMLTTLTTTEITERVVYRILSEGHYRKH--- 389 Query: 296 IRKLYGDQCQAMLDALQ-------QYFPASCSWSKPEGGMFIWVTLPEHIDAGALLNEAV 348 D+ + LDA++ + + S P GMF+W + D+ AL A+ Sbjct: 390 -----ADRLRNKLDAVRDKTVRQMERIGIKINISTP-AGMFVWTDV--GCDSNALTERAM 441 Query: 349 EQEKVAFVPGAPFYANVAQKNTLRLSFVTVPPEQIRAGVER 389 EQ + PG+ F N +R + + I +ER Sbjct: 442 EQGYL-LAPGSLFSPNQLPSTNMRFNVAAMADPGILPFLER 481 >gi|134093921|ref|YP_001098996.1| MocR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 469 Score = 91.7 bits (226), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 93/299 (31%), Positives = 138/299 (46%), Gaps = 8/299 (2%) Query: 40 FAGGLPSPLTFPVEHMKVAFDRVLSQQGKMA-LQYGPTDGYLPLREWIAASLS-SDGAQI 97 F G+P+ FP + A L + G + L Y G + LR+ +A LS S Sbjct: 113 FQLGIPAMEGFPDKLFARARSSNLLKTGSFSSLVYPDPRGEIELRKEVAGYLSISRNLHC 172 Query: 98 TPEQVLMVSGSQQGLDLLGKVLIDEGSKVLVETPSYLGALQAFALYGAKFESVPSDESGL 157 PEQV + SG GL L+ +VL +G KV +E P +L + L VP D GL Sbjct: 173 FPEQVFITSGYSSGLGLVLRVLGLDGRKVWMEEPGFLLTRKGLELARLNIVPVPVDAEGL 232 Query: 158 QPETIEAIAAGARMLYSLPNFQNPTGRTLPVERRLKLVETCARLGLPLIEDDPYGALSYR 217 + AA A + P Q P G TL + RRL+L+E A +IEDD L Sbjct: 233 DVDYGIKNAADAALAVVTPGQQAPLGTTLSLRRRLQLLEWAAANNAWIIEDDYLSELQLE 292 Query: 218 NAPLPKMLSMNPAG-VIYMGSFSKVLTPGIRLGYVVAPRPLILKMEQAKQATDLHTAQLT 276 P P + S++ VI++GSFSK ++PG+RLG+VV P L + + + Sbjct: 293 GRPAPALASLDEGKRVIHIGSFSKTISPGLRLGFVVVPVELAEAFSEIVATLAPAPSPVI 352 Query: 277 QMVVYEAIKDGFLDQHVPTIRKLYGDQCQAMLDALQQYFPASCSWSKPEGGMFIWVTLP 335 Q+ + + DG Q V +++LY Q + + L+ W K G+ + + LP Sbjct: 353 QLATAQFMHDGHYIQRVRRLKRLYSAQSDGLCEQLRMR---DAEWIK--AGLAVLLRLP 406 >gi|134094271|ref|YP_001099346.1| putative aspartate aminotransferase A [Herminiimonas arsenicoxydans] Length = 368 Score = 66.2 bits (160), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 96/349 (27%), Positives = 148/349 (42%), Gaps = 45/349 (12%) Query: 71 LQYGPTDGYLPLREWIAASLSS-DGAQITPEQVLMVSGSQQGLDLLGKVLIDEGSKVLVE 129 +QY G LR IAA G + P ++++ +G+ L L L+++G++VL+ Sbjct: 41 MQYTSATGLPELRAAIAAHYRDMYGVDVAPSRIIITAGASGALLLACAALVEKGAEVLMS 100 Query: 130 TPSY---LGALQAFALYGAKFESVPSDESGLQPETIEAIAAGARMLYSLPNFQNPTGRTL 186 PSY + AF S P L + ++ L + NPTG ++ Sbjct: 101 DPSYPCNRHFVAAFDGSAKMIASGPEHRFQLSADMVQQNWGEQTRGVLLASPSNPTGTSI 160 Query: 187 PVERRLKLVETC-ARLGLPLIEDDPYGALSYRNAPLPKMLSMNPAGVIYMGSFSKVLT-P 244 + K+VE + G ++ D+ Y L Y AP LS+ VI + SFSK Sbjct: 161 DEDELRKIVEVVRGKQGFTIV-DEIYHGLRYDAAPF-SALSLGD-DVIVINSFSKYFNMT 217 Query: 245 GIRLGYVVAPRPLILKMEQAKQATDLHTAQLTQ-----------MVVYEAIKDGF---LD 290 G RLG++V P L+ +E+ Q + + L Q M VYEA K F D Sbjct: 218 GWRLGWLVVPETLVPPIEKLAQNLFICASSLAQHAGLACFAPAAMTVYEARKAEFKRRRD 277 Query: 291 QHVPTIRKLYGDQCQAMLDALQQYFPASCSWSKPEGGMFIWVTLPEHID--AGALLNEAV 348 VP + +L G + M D Y A CS L + D A+LNEA Sbjct: 278 YIVPALEEL-GFKVPVMPDG-AFYVYADCS------------ALSDDADELTIAMLNEA- 322 Query: 349 EQEKVAFVPGAPFYANVAQKNTLRLSFVTVPPEQIRAGVERLGKLIAAK 397 V VPG F + A + +R+S+ T E ++ + RL ++ + Sbjct: 323 ---GVVMVPGLDFGPSTAHR-YVRISYAT-SMENLQEAIARLRIFLSGR 366 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.318 0.135 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 798,127 Number of extensions: 34171 Number of successful extensions: 99 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 89 Number of HSP's successfully gapped: 5 Length of query: 398 Length of database: 1,000,347 Length adjustment: 84 Effective length of query: 314 Effective length of database: 723,567 Effective search space: 227200038 Effective search space used: 227200038 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)