BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1670.p
         (152 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094031|ref|YP_001099106.1| hypothetical protein HEAR0786 [...   263   3e-72

>gi|134094031|ref|YP_001099106.1| hypothetical protein HEAR0786
           [Herminiimonas arsenicoxydans]
          Length = 152

 Score =  263 bits (672), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 125/151 (82%), Positives = 139/151 (92%)

Query: 1   MSVYEKLKALNIELPAVATPAAAYVMYAQTGNTVFLSGHLAKKEGKVWVGQLGRDIGTDD 60
           MS Y+KLKALNIELPAVATPAAAYVMY Q+GNTVFLSGH+AKK+GK WVGQLG++I T++
Sbjct: 1   MSFYDKLKALNIELPAVATPAAAYVMYVQSGNTVFLSGHIAKKDGKPWVGQLGKNISTEE 60

Query: 61  AKQAARGVAIDLIATLQAACGGDLTRVKRIVKLMSLVNSTGDYTEHHLVTNGASELIGEV 120
            K AARGVAIDLIATLQAACGGDL RV+RIVK+MSLVNSTGDYTE HLVTNGASEL GE+
Sbjct: 61  GKLAARGVAIDLIATLQAACGGDLNRVQRIVKVMSLVNSTGDYTEQHLVTNGASELFGEI 120

Query: 121 FGEAGKHARSAFGVAQLPMGACVEIEMIAEI 151
           FG  G HARSAFGVAQ+P+GACVEIE+IAEI
Sbjct: 121 FGAQGVHARSAFGVAQIPLGACVEIELIAEI 151


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.133    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 296,742
Number of extensions: 11509
Number of successful extensions: 34
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 1
Length of query: 152
Length of database: 1,000,347
Length adjustment: 74
Effective length of query: 78
Effective length of database: 756,517
Effective search space: 59008326
Effective search space used: 59008326
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)