BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1668.p
         (199 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094029|ref|YP_001099104.1| hypothetical protein HEAR0784 [...   241   1e-65

>gi|134094029|ref|YP_001099104.1| hypothetical protein HEAR0784
           [Herminiimonas arsenicoxydans]
          Length = 196

 Score =  241 bits (616), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 118/197 (59%), Positives = 152/197 (77%), Gaps = 2/197 (1%)

Query: 2   IDALLPLMSFAFVSSITPGPNNIMLTSSGIWFGFRRSLPHLLGITFGFGVLLAVCAFGIG 61
           +++LLPL  FAFVSSITPGPNNIMLTSSGI FGF R +PH+LG+  GFGV+LA+CA GI 
Sbjct: 1   MESLLPLCLFAFVSSITPGPNNIMLTSSGIRFGFVRCIPHMLGVVCGFGVMLALCALGID 60

Query: 62  ELVVALPQVVLLLKALGCAYLLYLAWQLRHMAVAQAAERALQPMSFWAAAMFQFANPKAW 121
            L+VA+P + ++LK +G  YL+YLAWQLR MA +Q+   + +PMSF  A +FQFANPKAW
Sbjct: 61  SLIVAMPALHIVLKTIGSTYLIYLAWQLRSMAFSQSEGDSGRPMSFIGATLFQFANPKAW 120

Query: 122 VMAITGASAFMPLLHEHAGRLAILIYCAVFCVVNLPCVSVWAGAGSLLRRYLEEPLWRVV 181
           VMA+TGASAF+P +       AI ++C VF V+NLPC+ +WAG G++LRRYL +  W+ +
Sbjct: 121 VMAVTGASAFLPPMQP--AWFAIAVFCLVFSVINLPCIGIWAGTGAMLRRYLTQAKWQRL 178

Query: 182 FATTMIVLTLYAALAIW 198
           F   MI LTLY+ALAIW
Sbjct: 179 FCAIMIALTLYSALAIW 195


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.333    0.141    0.463 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 347,179
Number of extensions: 12112
Number of successful extensions: 85
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 1
Length of query: 199
Length of database: 1,000,347
Length adjustment: 77
Effective length of query: 122
Effective length of database: 746,632
Effective search space: 91089104
Effective search space used: 91089104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 126 (53.1 bits)