BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1667.p
         (343 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096021|ref|YP_001101096.1| threonine deaminase [Herminiimo...   110   7e-26

>gi|134096021|ref|YP_001101096.1| threonine deaminase [Herminiimonas
           arsenicoxydans]
          Length = 507

 Score =  110 bits (276), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 88/305 (28%), Positives = 147/305 (48%), Gaps = 10/305 (3%)

Query: 15  VYAGMASTPQLCWPLLNQALGAEVWVKHENHAPTGAFKVRGGMVYLHHLARQQPQLSGVI 74
           VY     +P    P L+Q  G +++ K E+     +FK+RG    + HL   Q +  GVI
Sbjct: 14  VYDVAVESPLELAPTLSQRFGNQIYFKREDIQSVFSFKLRGAYNKMAHLPPAQMK-RGVI 72

Query: 75  SATRGNHGQSVGLSARRFGIAATIVVPEGNSREKNVAMRALGVDLIEHGREFQDSREHAQ 134
            A+ GNH Q V LSA R G  A IV+P      K  A++A G +++  G  + D+ +HA 
Sbjct: 73  CASAGNHAQGVALSAARLGCRAVIVMPTTTPSVKIEAVKARGGEVVLFGDSYSDAYQHAL 132

Query: 135 QLAAERQWHMI-PSLHRNLVAGVATYWMELFTSQPA-LDLVLVPVGQGSGICGAVAARNA 192
            L  + +   + P    +++AG  T  ME+       +  + VP+G G  I G  A   A
Sbjct: 133 TLEKKLKLTFVHPFDDPDVIAGQGTIGMEILRQHSGPIHAIFVPIGGGGLIAGIGAYVKA 192

Query: 193 LGLKTRIIGVVSAHALAYKLSFDAGRKIEAPVTTHLADGVACRVPDQAALEVMFAHVDEV 252
           +    +IIGV +  + A   S  + R++        ADG A ++  +    +   +VD++
Sbjct: 193 VRPDIKIIGVQTVDSDAMARSLQSNRRVTMTDVGLFADGTAVKLVGEETFRLAKLYVDDI 252

Query: 253 VAVTDDEVMDAMKLAFIATHNVVEGAGACALAAALQLRTR-------LRGKKIGVTFSGG 305
           + V+ DEV  A+K  F  T +++E +GA ++A A     R       ++ + +    SG 
Sbjct: 253 ILVSTDEVCSAIKDVFQDTRSILEPSGALSVAGAKAYIERAHADKKPIKNETLITIASGA 312

Query: 306 NVDHD 310
           N++ D
Sbjct: 313 NMNFD 317


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.133    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 600,552
Number of extensions: 24150
Number of successful extensions: 66
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 261
Effective length of database: 730,157
Effective search space: 190570977
Effective search space used: 190570977
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)