BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1664.p (567 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095128|ref|YP_001100203.1| putative transporter with ATPas... 696 0.0 gi|134096472|ref|YP_001101547.1| putative ABC transporter [Hermi... 140 2e-34 gi|134093728|ref|YP_001098803.1| lipid ABC transporter membrane/... 127 2e-30 gi|134096161|ref|YP_001101236.1| ABC transporter ATP-binding pro... 116 3e-27 gi|134093506|ref|YP_001098581.1| ABC transporter ATP-binding pro... 106 3e-24 >gi|134095128|ref|YP_001100203.1| putative transporter with ATPase [Herminiimonas arsenicoxydans] Length = 585 Score = 696 bits (1796), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/556 (63%), Positives = 445/556 (80%), Gaps = 1/556 (0%) Query: 13 QALQDLRSDPSYLTLLRAYGSRFVEIIVAGVLVNLLGLLLPLYSRLIYDKVLGNHIPETL 72 +AL ++ DP Y+T+LRAYG R VEI+VAG L+N+ GLLLP+YSRL+YDKV+GNHIP+TL Sbjct: 30 EALGEITRDPMYVTMLRAYGKRLVEIVVAGFLINVFGLLLPIYSRLVYDKVIGNHIPDTL 89 Query: 73 WALTLGMLLFIALELMLRVIRVYYTEQLAGRLDGEFDEVSARRLLTAKVQAPVGVVLARY 132 WALTLGMLLF+ALE +LRVIR +Y EQLAG+ D +FD ++LL A+V PVGVVLA+Y Sbjct: 90 WALTLGMLLFLALEFVLRVIRTFYVEQLAGKFDIDFDLAVVKKLLAARVSWPVGVVLAKY 149 Query: 133 RDLSAARDLLSSNYMLLLVDLPFLVLYLVVLGLIGGHMVWVLLVGGGLLVGLQLLLKVPA 192 RD+++ARDLLSSNYML+++D PFL+LYL+ +GLIGG ++WV+LVGGGLLVG QLL K+PA Sbjct: 150 RDITSARDLLSSNYMLVIIDFPFLLLYLLAIGLIGGPILWVVLVGGGLLVGAQLLCKIPA 209 Query: 193 NDYAHAAMKAGTGKIDKLASIVYGMETLKTTPLQDRLMRAFLIDAATNAVAQAKSRFWVN 252 NDYA AM G K DKLA +V+G+ETLKT+ LQ R+ F DA + V QAK RFW + Sbjct: 210 NDYARVAMTVGATKTDKLAGLVFGIETLKTSALQKRVFDLFSRDAEVSGVTQAKGRFWAS 269 Query: 253 TSYAVSSVGYTLVSVATLVVGVYLVEENLLTVGALIACSLLISRATTVLSSLAALLGRIE 312 Y +SS GYTL++VATLVVGVY+VE N LTVGALIA S+L+ RA ++LSS+A +LGRI+ Sbjct: 270 VGYTISSSGYTLMTVATLVVGVYMVEANALTVGALIASSMLVGRAASMLSSVAMVLGRID 329 Query: 313 MFRRARAEFDQLFED-QPQRASADVLRQEMRGLIQVGNLLLHLDKKENPTLKNVSLTIQP 371 F++AR F++LF D Q + +V RQ++ G IQV NL + E LK +S I P Sbjct: 330 TFKQARTSFEELFVDTQNTNKTNEVDRQQIEGRIQVANLSFSIKPDEPAMLKQISFIINP 389 Query: 372 GEKVGIVGRSGSGKSTLLRALAGLHHPDEGHVLIDGVAVTAYAPEVRMRCIGFKPQEPFL 431 GEKVG+VGRSGSGKSTLLR LAG+H PD G VL+DG++V AY+ EVRMR I +KPQ+PFL Sbjct: 390 GEKVGLVGRSGSGKSTLLRCLAGVHAPDVGQVLMDGISVAAYSQEVRMRSIAYKPQDPFL 449 Query: 432 FDGTVAANIFIGDRVPGQVYEAALAVSSLDDLIARGELRLDQAIKAPGNLSGGQRQMVAL 491 FDGT+A+NIFI + + +Y+ AL VS +D+L+A G+LRLDQ + APGNLSGGQRQMVAL Sbjct: 450 FDGTLASNIFIDNTISTSIYQIALHVSCMDELLAGGQLRLDQMLVAPGNLSGGQRQMVAL 509 Query: 492 ARVIAATPRVLLLDEPTTGVDQQSEARIIERLVAYAGNRTLVVATHSPALLRHVERIIVI 551 AR IA+TP VLLLDEPTTGVDQ +E +IIERLVA+A NRTLVVATHSP LL+ ++RIIVI Sbjct: 510 ARAIASTPNVLLLDEPTTGVDQMTENKIIERLVAFAANRTLVVATHSPVLLKQMDRIIVI 569 Query: 552 DGGRIVADGPRDQILQ 567 + G+IVADGPR QILQ Sbjct: 570 NDGKIVADGPRAQILQ 585 >gi|134096472|ref|YP_001101547.1| putative ABC transporter [Herminiimonas arsenicoxydans] Length = 726 Score = 140 bits (352), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 118/387 (30%), Positives = 190/387 (49%), Gaps = 30/387 (7%) Query: 200 MKAGTGKIDK--------LASIVYGMETLKTTPLQDRLMRAFLIDAATNAVAQAKSRFWV 251 ++ G KID+ LA + G+ +K + R F N + V Sbjct: 319 LRNGFEKIDRIWSQVTNVLADTIPGIRVVKAFAQEKREAVRFREANKHNLAINDR----V 374 Query: 252 NTSYAVSSVGYTLVSVATLVV----GVYLVEENLLTVGALIACSLLISRATTVLSSLAAL 307 N +++ S TL++ L+V G++ V + L+TVG L A I+R T L S++ + Sbjct: 375 NKVWSLFSPTVTLLTEIGLLVVWALGIWQVSQGLITVGVLTAFLAYITRFYTRLDSMSRI 434 Query: 308 LGRIEMFRRARAEFDQLFE-----DQPQRASADVLRQEMRGLIQVGNLLLHLDKKENPTL 362 + + ++A ++F+ A+ V ++G I + N+ + + Sbjct: 435 ---VSVTQKAATGAKRIFDILDHVSSVPEATNPVHLTNVQGKITIKNIGFRYGNR--AVI 489 Query: 363 KNVSLTIQPGEKVGIVGRSGSGKSTLLRALAGLHHPDEGHVLIDGVAVTAYA-PEVRMRC 421 + + L IQPGE +G+VG SGSGKSTL+ + + +G +L+DG+ V + PE R R Sbjct: 490 RGLDLDIQPGEMIGLVGHSGSGKSTLVNLICRFYDVSDGAILVDGIDVRSIPIPEYR-RN 548 Query: 422 IGFKPQEPFLFDGTVAANIFIGD-RVPGQVYEAALAVSSLDDLIARGELRLDQAIKAPG- 479 IG QEPFLF GT+A NI G + AA ++ + I R D + G Sbjct: 549 IGLVLQEPFLFFGTIADNIAYGKPDASREEIIAAARAANAHEFILRLPHGYDSMVGERGQ 608 Query: 480 NLSGGQRQMVALARVIAATPRVLLLDEPTTGVDQQSEARIIERLVAYAGNRTLVVATHSP 539 LSGG+RQ +++AR + P +L+LDE T+ VD +E I + L RT + H Sbjct: 609 TLSGGERQRISIARALLIDPHILILDEATSSVDTTTEREIQKALDNLVRGRTTIAIAHRL 668 Query: 540 ALLRHVERIIVIDGGRIVADGPRDQIL 566 + LR +RI+V+D G+IV G D++L Sbjct: 669 STLRRADRIVVMDRGQIVEVGSHDELL 695 >gi|134093728|ref|YP_001098803.1| lipid ABC transporter membrane/ATP-binding protein [Herminiimonas arsenicoxydans] Length = 581 Score = 127 bits (318), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 100/321 (31%), Positives = 156/321 (48%), Gaps = 5/321 (1%) Query: 252 NTSYAVSSVGYTLVSVAT---LVVGVYLVEENLLTVGALIACSLLISRATTVLSSLAALL 308 +T A + V + S A +V+ + E+N TVG ++ + L ++A + Sbjct: 240 STLAATTPVTQIMASCAVAIVIVIALIQSEQNQTTVGGFVSFITAMLMLLAPLKNIAEVN 299 Query: 309 GRIEMFRRARAEFDQLFEDQPQRASADVLRQEMRGLIQVGNLLLHLDKKENPTLKNVSLT 368 G ++ A L + +P+R S L G + NL ++ L++++L+ Sbjct: 300 GPLQKGLTAAEAVFGLIDAKPERTSGKTLEARAAGKLDFINLGFSYPGHQSMALEDINLS 359 Query: 369 IQPGEKVGIVGRSGSGKSTLLRALAGLHHPDEGHVLIDGVAVTAYAPEVRMRCIGFKPQE 428 + PGE + VG SG GKSTL+ + G + G + +D V + A R I Q Sbjct: 360 VLPGETIAFVGMSGGGKSTLVNLVPGFYPATVGEIRLDDVPIEEIALTSLRRQIAMVSQH 419 Query: 429 PFLFDGTVAANIFIGDRVPGQV-YEAALAVSSLDDLIARGELRLDQAIKAPGN-LSGGQR 486 LFD T+AANI GD P + AA + LDD+IA L+ I G+ LSGGQR Sbjct: 420 VVLFDDTIAANIAYGDETPDRARILAAATAAHLDDVIAGLPQGLETMIGDNGSRLSGGQR 479 Query: 487 QMVALARVIAATPRVLLLDEPTTGVDQQSEARIIERLVAYAGNRTLVVATHSPALLRHVE 546 Q +A+AR I +L+LDE T+ +D +SE + L A RT +V H + + + Sbjct: 480 QRLAIARAIYKDAPILILDEATSALDSESERAVQAALDALMKGRTTLVIAHRLSTIERAD 539 Query: 547 RIIVIDGGRIVADGPRDQILQ 567 RI V+ GRIV G ++L+ Sbjct: 540 RIAVLAEGRIVELGSHQELLE 560 >gi|134096161|ref|YP_001101236.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 618 Score = 116 bits (290), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 77/214 (35%), Positives = 119/214 (55%), Gaps = 9/214 (4%) Query: 362 LKNVSLTIQPGEKVGIVGRSGSGKSTLLRALAGLHHPDEGHVLIDGVAVTAYAPEVRMRC 421 + +LTI+PGEKVG+VGRSG+GKST++ L + ++G +LIDG + A+ + +R Sbjct: 376 IDQFNLTIRPGEKVGLVGRSGAGKSTIVNLLLRFYDLEQGRILIDGQDI-AHVTQNSLRA 434 Query: 422 -IGFKPQEPFLFDGTVAANIFIG--DRVPGQVYEAALAVSSLDDLI----ARGELRLDQA 474 +G Q+ L +V NI G D + +AA + D ++ A+G D Sbjct: 435 QVGMVTQDTSLLHRSVRDNILYGRPDASEADMIDAAKRAEAHDFILTLSDAKGRTAYDAH 494 Query: 475 IKAPG-NLSGGQRQMVALARVIAATPRVLLLDEPTTGVDQQSEARIIERLVAYAGNRTLV 533 + G LSGGQRQ +A+ARV+ +LLLDE T+ +D + EA I L +T+V Sbjct: 495 VGERGVKLSGGQRQRIAIARVMLKDAPILLLDEATSALDSEVEAAIQTSLYELMEGKTVV 554 Query: 534 VATHSPALLRHVERIIVIDGGRIVADGPRDQILQ 567 H + + ++R+IV+D GRIV G ++LQ Sbjct: 555 AIAHRLSTIAAMDRLIVLDKGRIVEQGSHRELLQ 588 >gi|134093506|ref|YP_001098581.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 648 Score = 106 bits (265), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 74/209 (35%), Positives = 105/209 (50%), Gaps = 6/209 (2%) Query: 362 LKNVSLTIQPGEKVGIVGRSGSGKSTLLRALAGLHHPDEGHVLIDGVAVTAYAPEVRMRC 421 L +V TI G +VG SGSGKSTL R L + +EG +LIDG V Sbjct: 396 LFDVDFTIAAGTTTAVVGHSGSGKSTLSRLLFRFYDVNEGAILIDGQDVRDVTQASLRNA 455 Query: 422 IGFKPQEPFLFDGTVAANIFIGDRVPGQVYE---AALAVSSLDDLIARGELRLDQAIKAP 478 IG PQ+ LF+ T+ NI G PG + AA + + D I + Sbjct: 456 IGIVPQDTVLFNDTIEYNIAYGK--PGASKDDIVAAAKSAYIHDFIESLPDGYATMVGER 513 Query: 479 G-NLSGGQRQMVALARVIAATPRVLLLDEPTTGVDQQSEARIIERLVAYAGNRTLVVATH 537 G LSGG++Q VA+AR + P +L+ DE T+ +D ++E I +L A +RT +V H Sbjct: 514 GLKLSGGEKQRVAIARTLLKHPAILIFDEATSALDSKAEQAIQAQLKEIAKDRTTMVIAH 573 Query: 538 SPALLRHVERIIVIDGGRIVADGPRDQIL 566 + + +I+V+D GRIV G Q+L Sbjct: 574 RLSTIVDAAQILVLDHGRIVERGTHAQLL 602 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.323 0.139 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 930,567 Number of extensions: 35591 Number of successful extensions: 297 Number of sequences better than 1.0e-08: 49 Number of HSP's gapped: 235 Number of HSP's successfully gapped: 52 Length of query: 567 Length of database: 1,000,347 Length adjustment: 87 Effective length of query: 480 Effective length of database: 713,682 Effective search space: 342567360 Effective search space used: 342567360 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 131 (55.1 bits)