BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1663.p
         (555 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095129|ref|YP_001100204.1| hypothetical protein HEAR1930 [...   800   0.0  

>gi|134095129|ref|YP_001100204.1| hypothetical protein HEAR1930
           [Herminiimonas arsenicoxydans]
          Length = 554

 Score =  800 bits (2066), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/548 (69%), Positives = 470/548 (85%)

Query: 1   MKNLRQFYALAAIPTLLLLLGAFLFRGFVGHAIQINPFLNLFIIAVAVFGVSLIGYNLYR 60
           MK LR++Y LA IP+L+LL G  LF+ FV HA+ INP LNLFII VAVFGV+LI Y++Y+
Sbjct: 1   MKTLRKYYVLAMIPSLVLLTGGILFKDFVLHAVHINPILNLFIIGVAVFGVALIMYDIYK 60

Query: 61  VNWEYAKLMQFYDRTKAGESMESLVKAPEFDGTEIGQVLVSVASTKGRLTSRIEQETIEG 120
           VNWEY KL  FY R  AGE +E+LVK P F GTEI +VLVSVA+TKGRLT+RIEQETIE 
Sbjct: 61  VNWEYNKLQMFYARATAGELLENLVKDPTFAGTEIAKVLVSVANTKGRLTTRIEQETIER 120

Query: 121 SLHDLRAHLDAKTEFPQFLTGFMIALGLLGTFIGLLETLVSTAALIDGFGKASAGGDMDA 180
           SL +L  HL+A+ EFPQ+LTGFMIALGLLGTFIGLLETLVSTA LI+GFG+AS G DMDA
Sbjct: 121 SLAELHTHLEARMEFPQYLTGFMIALGLLGTFIGLLETLVSTADLINGFGQASQGSDMDA 180

Query: 181 SFMHLVADLQKPLASMGTAFSASMFGLIGSLALGLTLTPLRAASKKLVTRARECISDMVQ 240
           SF HLVADL KPLASMGTAFSASMFGLIGSL LGLTL  LR A K+LV  ARECIS MV+
Sbjct: 181 SFAHLVADLNKPLASMGTAFSASMFGLIGSLTLGLTLVCLRGAGKRLVVAARECISVMVE 240

Query: 241 HVVHDMSGPAATQRQGVSETFLAEFLQDLMVLQRESIMAARNSSEASLQAGIKLEGLNDR 300
           HVVH+MSGP A+QRQG+SE+FL EFL DLMVLQRES++ +RNSS+ASLQAG+KLE +N+R
Sbjct: 241 HVVHEMSGPGASQRQGISESFLTEFLHDLMVLQRESVLTSRNSSDASLQAGMKLEAMNER 300

Query: 301 LNNIVQLFNDSMEESRSLRQLVAFGPRMHETAQQTLEEIRNVGQLINTKITSARDLSDSL 360
           L+ + +LF +S++ES+++RQLV FGPRMHE  QQTLEEIR +GQ+IN K+ S +D++ SL
Sbjct: 301 LSTVARLFQESIDESKNIRQLVTFGPRMHEVGQQTLEEIRGLGQMINQKLESTQDITQSL 360

Query: 361 SSLEERLSVNGDIANRTFEVLPQIVTTIQAGQLALSSALTSLQAQQGEISNMNEKSAQNI 420
           S L ERLSVNGDIA R+F+VLPQIV  +Q+GQ ALSSA++SLQAQQ ++++++EK+AQ+I
Sbjct: 361 SLLNERLSVNGDIALRSFDVLPQIVGAMQSGQTALSSAMSSLQAQQSDVASVHEKTAQHI 420

Query: 421 AQLPALLNQISVRLADEMGAIQYQSELQATVAARLNELGSTIGENSSNMARDALSARQLQ 480
           AQLP LL+Q+S+RL DE+ AIQ+Q+E+ + VA+RL +LG+ IGENS+N+ RDAL+ARQLQ
Sbjct: 421 AQLPGLLSQVSIRLGDELNAIQHQAEIHSNVASRLGQLGTVIGENSANITRDALAARQLQ 480

Query: 481 IDLAKHMATQNDRVKNLGAIPQSLTSITEALMRQNINWQTVIEEMRSGRQTMVKDLRLEL 540
           IDLAKHMA QN+R+K L AIPQ+L +I+EAL+RQN+  QT+IEEMR+GRQTM+KDLRLEL
Sbjct: 481 IDLAKHMAMQNERIKGLDAIPQALANISEALVRQNVMSQTIIEEMRNGRQTMIKDLRLEL 540

Query: 541 REAIRELT 548
           REA+REL+
Sbjct: 541 REAMRELS 548


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.131    0.352 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 782,596
Number of extensions: 27947
Number of successful extensions: 124
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 1,000,347
Length adjustment: 86
Effective length of query: 469
Effective length of database: 716,977
Effective search space: 336262213
Effective search space used: 336262213
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)