BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1662.p
         (457 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095130|ref|YP_001100205.1| putative Type I secretion membr...   573   e-165

>gi|134095130|ref|YP_001100205.1| putative Type I secretion membrane
           fusion protein, HlyD [Herminiimonas arsenicoxydans]
          Length = 456

 Score =  573 bits (1476), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 295/445 (66%), Positives = 355/445 (79%), Gaps = 7/445 (1%)

Query: 16  RSKGFMRRVAPRLDRRLGELQAMPRPRLAVLTCAALLVLLVVWSIFAPIDMVVRGSGRIV 75
           R +   R+  P LDR +   + MP P+L VL     L+LLV+W+ FAPIDMVVRG GRIV
Sbjct: 16  RVESATRKAVPVLDRGIESYREMPGPKLFVLALLIGLLLLVIWAYFAPIDMVVRGQGRIV 75

Query: 76  ASEHNQVIQHLEGGIVSAILVREGAVVKKGQTLISIADVRANADLGEGRVKILGLRAKIA 135
            S+HNQ+IQHLEGGIVSAI+VREGA V+K Q LI+I DVRA++D GEGR+K+LGLRA++A
Sbjct: 76  PSDHNQIIQHLEGGIVSAIVVREGAAVRKEQVLITIRDVRASSDQGEGRIKLLGLRARVA 135

Query: 136 RLSAEASGAASLQMPADLDHDDPAVQSEQAAFAARSAKLMQELSVLREQAAQRQAELGEA 195
           RL+AEASGAA L +PAD+  D    QSEQAAFAAR AKL  ELS+LREQ  QRQAEL E 
Sbjct: 136 RLTAEASGAAQLNLPADMLADLTG-QSEQAAFAARQAKLNGELSILREQMTQRQAELNET 194

Query: 196 ISRQKSQASELDLAQRQYKLIHNMLERSAASQLEDIQAAARVQDAQSKLAANDAMIPRLK 255
           ISRQKS   E  L Q+QY+L+H M  +SAASQLEDIQA +R QD +S+L A  +MIPRL+
Sbjct: 195 ISRQKSLTDEYALVQQQYQLVHAMYLKSAASQLEDIQAQSRAQDVRSRLNAASSMIPRLR 254

Query: 256 AAIAESQAKMGEAASRFRSDARTELTAAETELARLQEEIKSRNDRVSRSEVKAPMDGVVN 315
           AAI+E+QAK+ +  SRFR++AR +LT AETELARL EE+KSRNDRV RSEVKAPMDGVVN
Sbjct: 255 AAISEAQAKVTDGVSRFRAEARADLTTAETELARLSEEMKSRNDRVLRSEVKAPMDGVVN 314

Query: 316 RVMINTVGGVVRPGDPIIEMTPSDDKLVIEARISPTDRAELVPGARARVKVSAYDYGVYG 375
           R+ +NTVGGVV+PGDPI+EMTP DDK+V+EA I+PTDRAEL  G  ARVKV+AYDYGV+G
Sbjct: 315 RIFVNTVGGVVKPGDPILEMTPIDDKVVVEANINPTDRAELAIGKPARVKVTAYDYGVFG 374

Query: 376 AMEGVVTEISADTVPDDNNPRGERSYRIKIAVQRGDHALQ---RKLALMPGMTASADIIV 432
           +M+G VTEISADTVP++   RGER YR+KI V R    ++     L LMPGMTA+ADI+V
Sbjct: 375 SMQGRVTEISADTVPEE---RGERHYRVKIEVTRDPEQIKSAGNGLPLMPGMTATADIVV 431

Query: 433 GRRTVWQYLMSPLSRFGQGALREPR 457
           GRRTVWQYLMSP++RF Q ALREPR
Sbjct: 432 GRRTVWQYLMSPINRFTQTALREPR 456


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.131    0.354 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 746,730
Number of extensions: 27452
Number of successful extensions: 161
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 2
Length of query: 457
Length of database: 1,000,347
Length adjustment: 85
Effective length of query: 372
Effective length of database: 720,272
Effective search space: 267941184
Effective search space used: 267941184
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)