BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1660.p
         (551 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095132|ref|YP_001100207.1| putative signal peptide [Hermin...   522   e-149

>gi|134095132|ref|YP_001100207.1| putative signal peptide
           [Herminiimonas arsenicoxydans]
          Length = 553

 Score =  522 bits (1345), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 304/553 (54%), Positives = 386/553 (69%), Gaps = 35/553 (6%)

Query: 6   VLKSKRFVLAVSLGLAAHPAAVVWAADKLSPSGEAAVSGQAQPVRLDNTLDRPPQIRLGA 65
           ++ S  F++A  L LAA  A+   A   L  S   A  G+ QP     T D P Q    +
Sbjct: 9   LISSIPFLIASQLALAAPSASDALAQSNLFRSRPGA--GE-QPF----TQDIPRQTPTPS 61

Query: 66  DPAGPSATDYRLPGLPADTPA-------------------SSAQDEILLLLRQSDPDFSG 106
               P AT   L  LP+D P                     S  DEIL LLRQSD  FS 
Sbjct: 62  VELAPVATPPAL-RLPSDVPKRTKNENTNAAKASENVQADGSRDDEILQLLRQSDKTFSS 120

Query: 107 NRIALPQ-ISIVTEGETVPDLTLRSVLDLALGNSYSFAATAAQADQARYAAKATAGQLGP 165
             + LP  I+ +++G     L+L   L   L NSYS+AA +A A+ A Y   A  GQLGP
Sbjct: 121 PAVPLPDGIAALSDGPLQNMLSLEEALARTLQNSYSYAAASAVAEGAVYGKNAALGQLGP 180

Query: 166 TLDLRAQKGNEYSSPSSVLDPNTGQIQRASYHKRWDVTLIGRQPIFAPGSYYDYRKSSSL 225
           TLD+RAQ+G EYS+P+S+++ NTG+   +  H RWD ++I RQP+FAP SY++YRK +SL
Sbjct: 181 TLDVRAQRGREYSAPASIINQNTGRALSSDTHIRWDNSVILRQPLFAPASYFEYRKQASL 240

Query: 226 ADAADLRRDDARENLYYNAIKAYYDVMRAYATLSFSRSYAQRMGSLLDYMSKRLEGGGAS 285
           A+AADLR++DARE LYY  IKAYYD++R+Y  L+F+RSY +RM +L +YM+KRL+GGGAS
Sbjct: 241 ANAADLRKEDAREALYYTTIKAYYDLLRSYVGLTFARSYTERMDTLQEYMNKRLQGGGAS 300

Query: 286 RIDFERVRGRSLTAQSAVAEAEGALESAMVSLNQITGRKIEQIEVPDHMMPVVPDTSKLA 345
           ++DFERVRGR+LTA+S + EAEG LESAMV+L Q+TG + +Q+ +P  MMP+VP +S+LA
Sbjct: 301 KVDFERVRGRALTARSTMIEAEGVLESAMVTLAQLTGVRSQQLGIPSKMMPIVPTSSRLA 360

Query: 346 LQDIYETNPGVRAARRDVDAANLELKSARAKFSPTLAVEWTQTKTRGAGGAIDTTDNSLQ 405
           L+ IYE NP VRAAR D  AAN ELKSAR++FSP  ++E +Q +T  AGG         +
Sbjct: 361 LEQIYENNPAVRAARLDAAAANEELKSARSRFSPNFSIEMSQARTDNAGG-------DGR 413

Query: 406 LTTDRRLMMVVTMNLLNGGSDVYYSKQAGAKYVEKSNTALDLERKLREQIEINYRTLGAV 465
           LTTDRR M V+ MNLLNGGSD YY KQ G+KYVEKSNTA D+ERKL+EQIEINYRTL AV
Sbjct: 414 LTTDRRYMFVMNMNLLNGGSDYYYQKQIGSKYVEKSNTASDIERKLKEQIEINYRTLDAV 473

Query: 466 RKRMEISRQAYLTNANVADVFLEQLSTGSKQLLDVLDAYQQAYQARMDFANLLFQQADIS 525
           +KR+ I+RQAY TNA+VADVFLEQL+ G+KQLLDVLDAYQQAY +R++ + LLF QADIS
Sbjct: 474 KKRITIARQAYQTNADVADVFLEQLAIGNKQLLDVLDAYQQAYLSRVELSQLLFLQADIS 533

Query: 526 YQILRNTGRASAL 538
           YQILRNTGRAS+ 
Sbjct: 534 YQILRNTGRASSF 546


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.315    0.129    0.356 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 872,784
Number of extensions: 32201
Number of successful extensions: 112
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 2
Length of query: 551
Length of database: 1,000,347
Length adjustment: 86
Effective length of query: 465
Effective length of database: 716,977
Effective search space: 333394305
Effective search space used: 333394305
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)