BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1655.p (249 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094008|ref|YP_001099083.1| short chain dehydrogenase [Herm... 334 3e-93 gi|134095265|ref|YP_001100340.1| 3-oxoacyl-[acyl-carrier-protein... 103 8e-24 gi|134093831|ref|YP_001098906.1| 3-oxoacyl-[acyl-carrier-protein... 97 6e-22 gi|134096030|ref|YP_001101105.1| 3-ketoacyl-(acyl-carrier-protei... 94 5e-21 gi|134095523|ref|YP_001100598.1| 3-oxoacyl-[acyl-carrier-protein... 94 5e-21 >gi|134094008|ref|YP_001099083.1| short chain dehydrogenase [Herminiimonas arsenicoxydans] Length = 249 Score = 334 bits (856), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 167/249 (67%), Positives = 201/249 (80%) Query: 1 MTDKVIIVTGGSRGIGAATALLAGQRGYAVCVNYVSNREAAEAVAGQIRAAGGRAITVAG 60 M+ KV+IVTGGSRGIGA A L GYAVC++Y+ N+ AA+A+ IR GG A+ VA Sbjct: 1 MSKKVMIVTGGSRGIGAEIAKLGAIDGYAVCISYLHNKTAADAIVDLIRLTGGTAMAVAA 60 Query: 61 DVSKEEDVLRIFTTTDQQLGRVTALVNNAGILEHQSRLDAMSAERITRVLVANVTGSLLC 120 D++ E D+LR+F T D++LG +TALVNNAGILE Q R+D M A R+ R+ N+ GS LC Sbjct: 61 DMAVEADILRMFETVDRELGPLTALVNNAGILEQQMRVDQMDAARMQRIFTTNIVGSFLC 120 Query: 121 AREAVKRMSTRHGGQGGAIVNLSSMAAKLGGPGEYVDYAASKGAIDAFTVGLAKEVAAEG 180 AREAV+RMST HGG GGAIVN+SS+AA+ GGPGEYVDYAASKGAID T+GLAKEVA EG Sbjct: 121 AREAVRRMSTLHGGAGGAIVNVSSVAARTGGPGEYVDYAASKGAIDTLTIGLAKEVATEG 180 Query: 181 IRVNAVRPGLIYTDIHASGGEAGRVDRLKDAVPMKRGGSAEEVAHAILWLLSDESSYATG 240 IRVNAVRPG+IYT+IHASGGE GRVDR+K VPM+RGG A EVA A+LWLLSD++SY TG Sbjct: 181 IRVNAVRPGVIYTEIHASGGEPGRVDRVKGNVPMQRGGEANEVAQAVLWLLSDKASYTTG 240 Query: 241 TFIDVSGGR 249 T +DV+GGR Sbjct: 241 TLLDVTGGR 249 >gi|134095265|ref|YP_001100340.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 247 Score = 103 bits (257), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 80/246 (32%), Positives = 128/246 (52%), Gaps = 12/246 (4%) Query: 4 KVIIVTGGSRGIGAATALLAGQRGYAVCVNYVSNREAAEAVAGQIRAAGGRAITVAGDVS 63 +V +VTG SRGIG A A ++G V S E+ A + A G+ + + DV+ Sbjct: 9 QVALVTGASRGIGRAIAQALAKQGVKVIGTATS--ESGAAAISEYLAESGKGVVL--DVN 64 Query: 64 KEEDVLRIFTTTDQQLGRVTALVNNAGILEHQSRLDAMSAERITRVLVANVTGSLLCARE 123 + + ++ G VT LVNNAGI + Q + M E V+ N+T +R Sbjct: 65 DAARSVALIDEIQKEFGTVTILVNNAGITQDQLAMR-MKDEEWDSVIATNLTSVGRLSRA 123 Query: 124 AVK-RMSTRHGGQGGAIVNLSSMAAKLGGPGEYVDYAASKGAIDAFTVGLAKEVAAEGIR 182 ++ M +HG I+N++S+ G G+ ++YAA+K + + LA+E+ + I Sbjct: 124 VLRGMMKAKHG----RIINITSVVGSTGNAGQ-MNYAAAKAGVAGMSRALAREIGSRNIT 178 Query: 183 VNAVRPGLIYTDIHASGGEAGRVDRLKDAVPMKRGGSAEEVAHAILWLLSDESSYATGTF 242 VN V PG I TD+ + E ++ L VP+ R G E++A A+ +L S ++SY TGT Sbjct: 179 VNCVAPGFIDTDMTKTLSEQ-QISALLQQVPLGRLGVPEDIAAAVSFLASPQASYITGTT 237 Query: 243 IDVSGG 248 + V+GG Sbjct: 238 LHVNGG 243 >gi|134093831|ref|YP_001098906.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 246 Score = 97.4 bits (241), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 75/247 (30%), Positives = 121/247 (48%), Gaps = 7/247 (2%) Query: 4 KVIIVTGGSRGIGAATALLAGQRGYAVCVNY-VSNREAAEAVAGQIRAAGGRAITVAGDV 62 ++ +VTGG G+G A + GY V Y SN A E +A ++A+G DV Sbjct: 3 RLALVTGGMGGLGEAICIKLAALGYQVVTTYSPSNTTAGEWLA-TMKASGYDFRAYPCDV 61 Query: 63 SKEEDVLRIFTTTDQQLGRVTALVNNAGILEHQSRLDAMSAERITRVLVANVTGSLLCAR 122 S + + +++G + LVNNAGI + M V+ N+ + Sbjct: 62 SDYDSAQQCVALIKKEIGEIDVLVNNAGITRDMT-FKKMEKTDWDAVMGTNLDSVFNMTK 120 Query: 123 EAVKRMSTRHGGQGGAIVNLSSMAAKLGGPGEYVDYAASKGAIDAFTVGLAKEVAAEGIR 182 M R G+ I+N+SS+ A+ G G+ +Y+A+K + FT LA EVA + + Sbjct: 121 PVCDGMVERGWGR---IINISSVNAQKGAFGQ-TNYSAAKAGMHGFTKALALEVARKAVT 176 Query: 183 VNAVRPGLIYTDIHASGGEAGRVDRLKDAVPMKRGGSAEEVAHAILWLLSDESSYATGTF 242 VN + PG I T + + + ++ +PM R G EEVA + +L SDE+++ TG Sbjct: 177 VNTISPGYIGTKMVTAIPQDVLDTKIVPQIPMGRLGKPEEVAGLVAYLASDEAAFVTGAN 236 Query: 243 IDVSGGR 249 I ++GG+ Sbjct: 237 IAINGGQ 243 >gi|134096030|ref|YP_001101105.1| 3-ketoacyl-(acyl-carrier-protein) reductase [Herminiimonas arsenicoxydans] Length = 239 Score = 94.4 bits (233), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 77/222 (34%), Positives = 116/222 (52%), Gaps = 9/222 (4%) Query: 27 GYAVCVNYVSNREAAEAVAGQIRAAGGRAITVAGDVSKEEDVLRIFTTTDQQLGRVTALV 86 G V V+ R+ A A+ I A GG A D++ E ++ T + G V LV Sbjct: 25 GLHVIVHANRGRDKASAICTAIIADGGSAEVAVFDITDAE-ATKVALETLLEAGPVQVLV 83 Query: 87 NNAGILEHQSRLDAMSAERITRVLVANVTGSLLCAREAVKRMSTRHGGQGGAIVNLSSMA 146 NNAGI + M++ + V+ ++ G + M G+ I+N+SS+A Sbjct: 84 NNAGI-HSDAVFPGMTSAQWHSVIDVSLHGFFNVTQPLTMPMIRTRWGR---IINVSSIA 139 Query: 147 AKLGGPGEYVDYAASKGAIDAFTVGLAKEVAAEGIRVNAVRPGLIYTDIHASGGEAGRVD 206 A G G+ V+Y+A+KGA+ + T LA E+A+ GI VNAV PG+I T + EA Sbjct: 140 AVTGNRGQ-VNYSAAKGALHSATKSLALELASRGITVNAVAPGIIATGMIE---EAFDDK 195 Query: 207 RLKDAVPMKRGGSAEEVAHAILWLLSDESSYATGTFIDVSGG 248 +++ VPMKR G EEVA I +L S ++Y +G I ++GG Sbjct: 196 AIQNIVPMKRAGKPEEVADLIGFLASPNAAYISGQIISINGG 237 >gi|134095523|ref|YP_001100598.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 240 Score = 94.4 bits (233), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 75/246 (30%), Positives = 122/246 (49%), Gaps = 11/246 (4%) Query: 4 KVIIVTGGSRGIGAATALLAGQRGYAVCVNYVSNREAAEAVAGQIRAAGGRAITVAGDVS 63 K +V+GG+RG+GAA A+ GYAV V Y N + A + R + DVS Sbjct: 3 KTALVSGGTRGLGAAIAIYLRSAGYAVAVTYHHNADT----AAEFRKNTSIPV-FCWDVS 57 Query: 64 KEEDVLRIFTTTDQQLGRVTALVNNAGILEHQSRLDAMSAERITRVLVANVTGSLLCARE 123 + +G + LVNNAGI + L M+ + V+ N+ +R Sbjct: 58 DYAQCQEGIRQVELDVGPIDILVNNAGI-TRDAVLHHMTPGQWIEVINTNLGSVFNMSRN 116 Query: 124 AVKRMSTRHGGQGGAIVNLSSMAAKLGGPGEYVDYAASKGAIDAFTVGLAKEVAAEGIRV 183 ++ M R+ G+ I+N+SS+ + G G+ +YAA+K I FT LA E A + I V Sbjct: 117 VIEGMRERNFGR---IINISSVNGERGQIGQ-ANYAAAKAGIFGFTKSLALESARKNITV 172 Query: 184 NAVRPGLIYTDIHASGGEAGRVDRLKDAVPMKRGGSAEEVAHAILWLLSDESSYATGTFI 243 NA+ PG TD+ S ++++ +P+ G+ ++A +++L + S + TG Sbjct: 173 NAIAPGYCDTDM-VSAIPQEVLEKIVTGIPVGHLGTGSDIARLVVFLADNASGFITGATF 231 Query: 244 DVSGGR 249 DV+GG+ Sbjct: 232 DVNGGQ 237 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.316 0.132 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 450,970 Number of extensions: 17036 Number of successful extensions: 93 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 80 Number of HSP's successfully gapped: 11 Length of query: 249 Length of database: 1,000,347 Length adjustment: 79 Effective length of query: 170 Effective length of database: 740,042 Effective search space: 125807140 Effective search space used: 125807140 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 127 (53.5 bits)