BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1654.p
         (166 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094007|ref|YP_001099082.1| hypothetical protein HEAR0761 [...   158   1e-40

>gi|134094007|ref|YP_001099082.1| hypothetical protein HEAR0761
           [Herminiimonas arsenicoxydans]
          Length = 169

 Score =  158 bits (399), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 86/156 (55%), Positives = 101/156 (64%), Gaps = 3/156 (1%)

Query: 1   LLASFAPVVARDTRTLILGSLPGAASLAKSQYYGHPRNAFWRLVGDVLGLDLYAMDYEDR 60
           LL+ FAPV+ R T  LILGS PG ASL   QYY HPRN FWRL+  ++  DL A+ Y DR
Sbjct: 13  LLSGFAPVIDRRTEILILGSFPGLASLTAQQYYAHPRNQFWRLLSALINEDLVALPYADR 72

Query: 61  LATLLAHRIGLWDVIAQARRIGSLDSEIRDHSGNDLLALIATLPELHTIAFNGGTAGKIG 120
           L TLL+HRIG+WDVI    R GSLDS IR    ND   L    P L  IAFNG TAGK  
Sbjct: 73  LGTLLSHRIGVWDVIDVCTRQGSLDSAIRAAIHNDYAQLRQLAPALTRIAFNGKTAGK-- 130

Query: 121 MKALGEQARKYRVLLLPSSSPAYAAVSYAQKLEGWQ 156
             AL  +A  +   +LPSSSPAYAA+++ QKL  W+
Sbjct: 131 QAALFAEA-GFETFVLPSSSPAYAAMTFEQKLAVWR 165


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 300,154
Number of extensions: 11971
Number of successful extensions: 37
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 1
Length of query: 166
Length of database: 1,000,347
Length adjustment: 75
Effective length of query: 91
Effective length of database: 753,222
Effective search space: 68543202
Effective search space used: 68543202
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)