BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1650.p
         (276 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094006|ref|YP_001099081.1| putative spermidine synthase [H...   407   e-115
gi|134095712|ref|YP_001100787.1| putative transferase, spermidin...   122   2e-29
gi|134094911|ref|YP_001099986.1| hypothetical protein HEAR1704 [...    79   3e-16

>gi|134094006|ref|YP_001099081.1| putative spermidine synthase
           [Herminiimonas arsenicoxydans]
          Length = 276

 Score =  407 bits (1046), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 199/273 (72%), Positives = 224/273 (82%), Gaps = 3/273 (1%)

Query: 1   MLIRRKSIEAQANTKAGPNRRRQQLEADASKP-RKPKYAPVTLSELEGVRYLHFGTEWVQ 59
           MLI+RKSIEA AN K+GP ++   +     KP RK K+APVTLSE  GVRYLHFGTEWVQ
Sbjct: 1   MLIKRKSIEADANLKSGPGKK--SIAPAKPKPARKVKFAPVTLSEQFGVRYLHFGTEWVQ 58

Query: 60  GAMRIRKPDWIELEYAQQMMAWMLFNRTPRHIVQLGLGTGALTKFSYRQFPQAQVTAVEL 119
           GAMRI KPDWIELEYAQQMMAWMLFN  P+HIVQLGLGTGALTKFSY+ F +AQVTAV+L
Sbjct: 59  GAMRISKPDWIELEYAQQMMAWMLFNDKPQHIVQLGLGTGALTKFSYKWFREAQVTAVDL 118

Query: 120 NPAVITICHSMFKLPEPDERLMIIESDALDFIVHAASHGIIDALQVDLYDATARGPVLDT 179
           NP+VITIC +MFKLP  DERL +IE DAL+++   A+ G IDALQVD+YDATARGPVLDT
Sbjct: 119 NPSVITICETMFKLPPNDERLNVIEMDALEYVNDPANLGRIDALQVDVYDATARGPVLDT 178

Query: 180 PEFYQACYDSLAPGGVMTVNLFGDHPSYAKNLRAMEYAFDTVVSLPEVHDGNVVALAFKG 239
           PEFYQ+C   L P G+MTVNLFGDHPSYA+NL AM +AFDTV+SLPEVHDGNV+A+AF  
Sbjct: 179 PEFYQSCAACLTPDGIMTVNLFGDHPSYARNLSAMHFAFDTVISLPEVHDGNVIAIAFNT 238

Query: 240 QIEFDIPELYARAALIEAQTKLPAKSWVNGIKA 272
               DI  LY RAA I A TKLPAKSWVNGIKA
Sbjct: 239 TPTLDIAALYERAAQITATTKLPAKSWVNGIKA 271


>gi|134095712|ref|YP_001100787.1| putative transferase, spermidine
           synthase [Herminiimonas arsenicoxydans]
          Length = 233

 Score =  122 bits (305), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 63/159 (39%), Positives = 96/159 (60%), Gaps = 3/159 (1%)

Query: 48  VRYLHFGTEWVQGAMRIRKPDWIELEYAQQMMAWMLFNRTPRHIVQLGLGTGALTKFSYR 107
           +R LHF  +++Q AM I  PD + L Y + MM ++LF   P+HI+ +GLG G+L K+ YR
Sbjct: 1   MRTLHFDHQYIQSAMSISAPDKLLLSYTRAMMGFLLFQPAPKHILMVGLGGGSLVKYCYR 60

Query: 108 QFPQAQVTAVELNPAVITICHSMFKLPEPDERLMIIESDALDFIVHAASHGIIDALQVDL 167
            FP  ++T +EL+  VI +    F +P  D+RL II++DA  ++      GI D + +D 
Sbjct: 61  HFPSTRITVLELHAEVIAL-RDHFMIPADDQRLEIIQADAAVYM-RDQPEGIADVIMLDG 118

Query: 168 YDATARGPVLDTPEFYQACYDSLAPGGVMTVNLFGDHPS 206
           + A      L T +FY+AC  +LAP GV+  NL+ D P+
Sbjct: 119 FSADGPASELGTSDFYRACLHTLAPQGVLVSNLW-DRPT 156


>gi|134094911|ref|YP_001099986.1| hypothetical protein HEAR1704
           [Herminiimonas arsenicoxydans]
          Length = 254

 Score = 79.0 bits (193), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 81/157 (51%), Gaps = 2/157 (1%)

Query: 48  VRYLHFGTEWVQGAMRIRKPDWIELEYAQQMMAWMLFNRTPRHIVQLGLGTGALTKFSYR 107
           +R LHF    VQ AMR+  PD + L Y Q M  ++  +  P+HI+ +GLG G+L K+ YR
Sbjct: 29  IRTLHFNEHVVQSAMRLSAPDELVLMYTQMMSRFLALHPAPQHILLIGLGGGSLVKYCYR 88

Query: 108 QFPQAQVTAVELNPAVITICHSMFKLPEPDERLMIIESDALDFIVHAASHGIIDALQVDL 167
           Q P  ++T +E N  VI +    F +P  D RL ++  DA+ ++    +    D + +D 
Sbjct: 89  QLPAVRMTVLESNADVIAL-RDRFMIPPDDARLQVLHVDAVQYLAQMTA-ASADVILLDG 146

Query: 168 YDATARGPVLDTPEFYQACYDSLAPGGVMTVNLFGDH 204
           +DA      L +  F   C   L   GV+  N+  D+
Sbjct: 147 FDADGAPQALRSRNFVSDCKRVLRKQGVLVANMGDDN 183


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.135    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 556,303
Number of extensions: 23121
Number of successful extensions: 71
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 3
Length of query: 276
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 196
Effective length of database: 736,747
Effective search space: 144402412
Effective search space used: 144402412
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)