BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1647.p (242 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095636|ref|YP_001100711.1| high-affinity branched-chain am... 242 1e-65 gi|134095847|ref|YP_001100922.1| high-affinity branched-chain am... 226 8e-61 gi|134096407|ref|YP_001101482.1| high-affinity branched-chain am... 218 2e-58 gi|134096263|ref|YP_001101338.1| ABC transporter ATP-binding pro... 141 4e-35 gi|134096235|ref|YP_001101310.1| ABC transporter ATP-binding pro... 124 5e-30 >gi|134095636|ref|YP_001100711.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 241 Score = 242 bits (618), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 125/240 (52%), Positives = 173/240 (72%), Gaps = 8/240 (3%) Query: 1 MLTISNLHAAYGKVEVLHGISMDVPKGKVVTLIGSNGAGKTTTMRAISGMIKPKG---GE 57 +L I+ L AYG ++ + GI +DV +G+++TLIG+NGAGKTTT++AI+G + P+ G Sbjct: 5 VLKIAGLKVAYGGIQAVKGIDLDVRQGELITLIGANGAGKTTTLKAITGTL-PECRVDGH 63 Query: 58 VTLGGKNITGLDSHKIARFGLAHSPEGRRVFATMSVIDNLLLGAFPRFTRARPKGDIAHD 117 + G+ I GL S ++ R LA PEGR VF MS+ +NLL+GAF R K IA D Sbjct: 64 IEYAGQAIKGLGSFELVRKKLAMVPEGRGVFTRMSIQENLLMGAFTR----NDKQGIADD 119 Query: 118 LERALELFPRLKERQAQLAGTLSGGEQQMLAMARAVMLNPEVILLDEPSMGLAPILVDEV 177 +E+ +FPRLKER AQ+AGTLSGGEQQMLAMARA+M +P+++LLDEPSMGL+PI+V+++ Sbjct: 120 MEKWFAVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPQLLLLDEPSMGLSPIMVEKI 179 Query: 178 FRIISRLKEQGVTMLLVEQFAAAALNVADYGYVLENGKISVHGPADKLQNDPAVKAAYLG 237 F +I + QG+T+LLVEQ A AL A YV+E+G I++ G A ++ NDP V+ AYLG Sbjct: 180 FEVIRSVAAQGITILLVEQNARLALQAAHRAYVMESGLITMQGDAQQMLNDPKVREAYLG 239 >gi|134095847|ref|YP_001100922.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 243 Score = 226 bits (576), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 115/237 (48%), Positives = 163/237 (68%), Gaps = 1/237 (0%) Query: 1 MLTISNLHAAYGKVEVLHGISMDVPKGKVVTLIGSNGAGKTTTMRAISGMIKPKGGEVTL 60 +L + NL YG +E GIS++V +G+ V +IGSNGAGK++ ++AI+G++KP G +TL Sbjct: 5 LLKVENLCVNYGHIEAARGISIEVGEGEFVGMIGSNGAGKSSALKAIAGVVKPASGSITL 64 Query: 61 GGKNITGLDSHKIARFGLAHSPEGRRVFATMSVIDNLLLGAFPRFTRARPKGDIAHDLER 120 GGK + GL SH++ G+A PEGR VFA SV DNL+LG F + R+ + D++R Sbjct: 65 GGKPVQGLASHEMVHQGVALVPEGRFVFADQSVEDNLILGGFVQAQRSGVAA-LRDDIDR 123 Query: 121 ALELFPRLKERQAQLAGTLSGGEQQMLAMARAVMLNPEVILLDEPSMGLAPILVDEVFRI 180 +LFPRLKER+ Q AG+LSGGEQQML +AR +M +P ++L+DE S+GLAP ++D +F + Sbjct: 124 MFQLFPRLKERRTQQAGSLSGGEQQMLVIARGLMSHPRLLLIDEVSLGLAPKILDFLFPV 183 Query: 181 ISRLKEQGVTMLLVEQFAAAALNVADYGYVLENGKISVHGPADKLQNDPAVKAAYLG 237 + L QG+++LLVEQ A AL V YV+ENG + + G + L D AV AYLG Sbjct: 184 LVDLNRQGLSILLVEQIATRALAVTSRAYVMENGNVKISGRSSDLVKDAAVMEAYLG 240 >gi|134096407|ref|YP_001101482.1| high-affinity branched-chain amino acid ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 235 Score = 218 bits (555), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 107/236 (45%), Positives = 157/236 (66%), Gaps = 4/236 (1%) Query: 2 LTISNLHAAYGKVEVLHGISMDVPKGKVVTLIGSNGAGKTTTMRAISGMIKPKGGEVTLG 61 L++ L Y KV VLH +S++V GK+ ++G+NGAGK+T +R+I G+ P+ GE+ Sbjct: 4 LSVKGLTTGYDKVNVLHDVSIEVAPGKITCILGANGAGKSTLIRSILGLTPPRQGEILWN 63 Query: 62 GKNITGLDSHKIARFGLAHSPEGRRVFATMSVIDNLLLGAFPRFTRARPKGDIAHDLERA 121 G+N+ G +H I G++ PEGR+VF MSV +NL LGAF A + L R Sbjct: 64 GRNLAGEKTHAIIASGISCIPEGRKVFPRMSVAENLALGAFLVTNSA----VVRERLARV 119 Query: 122 LELFPRLKERQAQLAGTLSGGEQQMLAMARAVMLNPEVILLDEPSMGLAPILVDEVFRII 181 E+FPRLKER AQLAGT+SGGEQ M+++ R +M P+++++DEPS+GL+P+ V E F +I Sbjct: 120 YEIFPRLKERAAQLAGTMSGGEQAMVSIGRGLMAEPQLLVIDEPSLGLSPLYVKENFNVI 179 Query: 182 SRLKEQGVTMLLVEQFAAAALNVADYGYVLENGKISVHGPADKLQNDPAVKAAYLG 237 R+ G+T+LLVEQ A L ++ YGYVL G++ G A++L ++ V+AAY G Sbjct: 180 RRINALGITVLLVEQNARQTLAISHYGYVLSQGRVMAEGTAEELASNDDVRAAYFG 235 >gi|134096263|ref|YP_001101338.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 246 Score = 141 bits (355), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 83/242 (34%), Positives = 132/242 (54%), Gaps = 11/242 (4%) Query: 2 LTISNLHAAYGKVEVLHGISMDVPKGKVVTLIGSNGAGKTTTMRAISGMIKPKGGEVTLG 61 L +S L +YG +V+ +++ V G+V+ L+G NGAGKTT+ I G++ G + L Sbjct: 5 LIVSGLQKSYGARQVVRDVALQVESGEVIGLLGPNGAGKTTSFYMIVGLVPSDAGRIELD 64 Query: 62 GKNITGLDSHKIARFGLAHSPEGRRVFATMSVIDNLLLGAFPRFTRARPKGDIAHDLERA 121 G +I+ HK A+ GL++ P+ VF +SV DN+ A R K +E+ Sbjct: 65 GVDISRQPIHKRAQLGLSYLPQEASVFRKLSVEDNI--RAVLELQRVNGKALSKEQIEQR 122 Query: 122 LELF------PRLKERQAQLAGTLSGGEQQMLAMARAVMLNPEVILLDEPSMGLAPILVD 175 L+ +L+E QA +LSGGE++ + +ARA+ NP +LLDEP G+ PI V Sbjct: 123 LDTLLADLQIEKLRENQAL---SLSGGERRRVEIARALATNPRFVLLDEPFAGVDPIAVI 179 Query: 176 EVFRIISRLKEQGVTMLLVEQFAAAALNVADYGYVLENGKISVHGPADKLQNDPAVKAAY 235 E+ RI+ LKE+G+ +L+ + L + D Y++ G + G D + D +V+ Y Sbjct: 180 EIQRIVRFLKERGIGVLITDHNVRETLGICDRAYIINQGAVLASGRPDDIIADESVRRVY 239 Query: 236 LG 237 LG Sbjct: 240 LG 241 >gi|134096235|ref|YP_001101310.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 267 Score = 124 bits (310), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 83/238 (34%), Positives = 131/238 (55%), Gaps = 10/238 (4%) Query: 1 MLTISNLHAAYGKVEVLHGISMDVPKGKVVTLIGSNGAGKTTTMRAISGMIKPKGGEVTL 60 ++ I NLH AYG+ +L ++MD P+GKV+ ++G +G+GKTT +R I G + P+ G V + Sbjct: 4 LVEIRNLHFAYGERPILSELTMDFPRGKVIAVMGGSGSGKTTVLRLIGGQLLPQAGNVVV 63 Query: 61 GGKNITGLDSHKIARF--GLAHSPEGRRVFATMSVIDNLLLGAFPRFTRARPKGDIAHDL 118 G+ ++ +D+ + R + + +F MSV DN+ AFP + HDL Sbjct: 64 DGQVVSEMDTKALYRMRRKMGMLFQHGALFTDMSVFDNV---AFPLREHTDLPEQLIHDL 120 Query: 119 ERALELFPRLKERQAQL-AGTLSGGEQQMLAMARAVMLNPEVILLDEPSMGLAPILVDEV 177 ++L AQL +SGG + +A+ARA+ L+P++I+ DEP GL PI + Sbjct: 121 -VLMKLQAVGLRNAAQLKPAEISGGMARRVALARAIALDPQLIMYDEPFAGLDPISMGMT 179 Query: 178 FRIISRLKEQ-GVTMLLVEQFAAAALNVADYGYVLENGKISVHG-PADKL-QNDPAVK 232 +I +L + G T +LV + +ADY Y L NGK+ G PA+ + DP VK Sbjct: 180 ANLIRKLNDALGSTTILVSHDVHESFLIADYVYFLSNGKVVAQGTPAEMMASTDPYVK 237 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.319 0.137 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 478,450 Number of extensions: 20088 Number of successful extensions: 231 Number of sequences better than 1.0e-08: 39 Number of HSP's gapped: 187 Number of HSP's successfully gapped: 40 Length of query: 242 Length of database: 1,000,347 Length adjustment: 79 Effective length of query: 163 Effective length of database: 740,042 Effective search space: 120626846 Effective search space used: 120626846 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 127 (53.5 bits)