BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1644.p (383 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095850|ref|YP_001100925.1| putative ABC-type branched-chai... 194 6e-51 gi|134093984|ref|YP_001099059.1| putative amino acid ABC transpo... 83 2e-17 gi|134096411|ref|YP_001101486.1| putative branched chain amino a... 77 1e-15 gi|134093666|ref|YP_001098741.1| hypothetical protein HEAR0390 [... 66 2e-12 gi|134094935|ref|YP_001100010.1| putative extracellular ligand-b... 56 3e-09 >gi|134095850|ref|YP_001100925.1| putative ABC-type branched-chain amino acid transport systems [Herminiimonas arsenicoxydans] Length = 397 Score = 194 bits (493), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 134/383 (34%), Positives = 213/383 (55%), Gaps = 17/383 (4%) Query: 9 VAAALM----SLALTSQAADPIKIGVSGPYTGGSAPMGVSMRDGVKLAVAEINAAGGVLG 64 +AA+LM +++ +Q P IG SG +TG +A G+++ G ++A+ EINA GGVLG Sbjct: 13 IAASLMLAAGAMSAHAQERKPC-IGFSGAFTGAAAFSGLAVEMGAEVAIDEINAKGGVLG 71 Query: 65 RQIQLVERDDEAKNERGVQIAQELINKEKVVATVGFINTGVALASQRFYQEAKIPVINNV 124 +++ LV+ DD + +GV + + +A +G ++GVALA + ++ IP I Sbjct: 72 QKLSLVKYDDAGQPPKGVDNTRRVAMANNCIAILGGYHSGVALAQREAVEQIGIPYIGAF 131 Query: 125 ATGTVITKQFEKEKDNYIFRTSAADKIQAKMIADEAVDKQKFSKVAILADSTNYGQLGRE 184 A GT I + + +N++FR SA D+ A ++D A+ KVAI ++T +G Sbjct: 132 AAGTKIIEP-DTGVNNWMFRVSAKDRWVAAYLSDVALAHSPGKKVAIFYENTGWGNGAAP 190 Query: 185 DLEKVLADKKVTPVAVEKYNIKDVDMTAQLLKSKQGGAQAVLTYGIGPELAQIANGMEKL 244 D++ L + V PVA+E +N D DMTAQL++++ GA+A++ +G+ E QI GM+KL Sbjct: 191 DVKAALEARGVKPVAMETFNWGDQDMTAQLMRARDAGAEAIVMFGLDREGNQILRGMDKL 250 Query: 245 NWHVPIIGSWPLSMGNFIDNSGKNGNGARMPQTFIQDG-NTPKRKAFIEAYQKAYKVDRM 303 N+ I +W L+ GN + +G NG + QTF G K A +A K YK+ + Sbjct: 251 NYKPAIASAWGLA-GNLGELAGPLANGVFVFQTFSWMGKQDAKTAAVYDALAKKYKL-KA 308 Query: 304 PSAVSAAQG----YDSILLLAAAIKQAGSTDGEKVRAALENLNTKVEGVVTTYDKPF--T 357 P+ + A G YD+I +LA AI+ AGS D KVR AL N + G+V Y F + Sbjct: 309 PADLKAGSGTANAYDAIHILAKAIEAAGSFDRVKVRDAL--FNVQHRGLVANYAPAFGKS 366 Query: 358 HDDHEAIKASMVVMGEVKNGRVI 380 + H+AI+ + NG ++ Sbjct: 367 AEKHDAIQTKDYKLTAWHNGVLL 389 >gi|134093984|ref|YP_001099059.1| putative amino acid ABC transporter [Herminiimonas arsenicoxydans] Length = 381 Score = 83.2 bits (204), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 96/332 (28%), Positives = 151/332 (45%), Gaps = 32/332 (9%) Query: 26 IKIGVSGPYTGGSAPMGVSMRDGVKLAVAEINAAGGVLGRQ---IQLVERDDEAKNERGV 82 IKIG P TG A MG +G ++AV ++NA G +G + QL+ DD + ++ Sbjct: 29 IKIGSVAPITGTDAHMGKDNENGARMAVEDLNAKGTTIGGKKVKFQLLAEDDASDPKQAT 88 Query: 83 QIAQELINKEKVVATVGFINTGVALASQRFYQEAKIPVINNVATGTVITKQFEKEKDNYI 142 AQ+L++ VVA +G +N+G + + R Y A IP ++ AT T+Q K Sbjct: 89 AAAQKLVD-AGVVAVIGHLNSGTTIPASRIYANAGIPQVSPSATNPKYTQQGFKTA---- 143 Query: 143 FRTSAADKIQAKMIADEAVDKQKFSKVAILADSTNYGQLGREDLEKVLADKKVTPVAVEK 202 FR A D +++ AV VA++ D T YGQ ++ K + + VA + Sbjct: 144 FRVVANDAQLGQVLGQYAVKTLGGKSVAVIDDRTAYGQGVADEFAKGVKAAGGSIVASQY 203 Query: 203 YNIKDVDMTAQL--LKSKQ------GGAQAVLTYGIGPELAQIANGMEKLNWHVPIIGSW 254 N K D + L +K+K+ GG AV GP L Q M++L + +G Sbjct: 204 TNNKATDFNSILTSIKAKKPDIIFFGGMDAVG----GPMLRQ----MKQLGINAKFMGGD 255 Query: 255 PLSMGNFIDNSGKNGNGARMPQTFIQD-GNTPK-RKAFIEAYQKAYKVDRMPSAV--SAA 310 + G+ G G Q + G P+ R+ +E ++ +YK R V +AA Sbjct: 256 GICTGSL---PGLAGTALGDNQVVCAEAGGVPEARRKGVEDFRASYK-KRFGVEVVYTAA 311 Query: 311 QGYDSILLLAAAIKQAGSTDGEKVRAALENLN 342 YD+ + A+K+A S + K L N Sbjct: 312 YAYDATNAVVEAMKKANSWEPAKYLPELAKSN 343 >gi|134096411|ref|YP_001101486.1| putative branched chain amino acid binding protein [Herminiimonas arsenicoxydans] Length = 390 Score = 77.0 bits (188), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 93/366 (25%), Positives = 150/366 (40%), Gaps = 26/366 (7%) Query: 20 SQAADPIKIGVSGPYTGGSAPMGVSMRDGVKLAVAEINAAGGVLGRQIQLVERDDEAKNE 79 + A D +KI GP TGG++ +G+ R+ LAV NA +LV +DDE + Sbjct: 25 ASAKDVVKIAFVGPLTGGTSSIGLGGRNSADLAVRLRNADPKA-KYTYELVSQDDECRPN 83 Query: 80 RGVQIAQELINKEKVVATVGFINTGVALASQRFYQEAKIPVINNVATGTVITKQFEKEKD 139 GVQ+A ++ + ++A V + VA+ + Y +PV V G V+ + Sbjct: 84 VGVQVATKIAADKNIIAGVTHFCSAVAMGTVAVYNRFGLPV---VVWGAVLPEITYGNNF 140 Query: 140 NYIFRTSAA----DKIQAKMIADEAVDKQKFSKVAILADSTNYGQLGREDLEKVLADKKV 195 + R + ++ AK +AD Q + K AI+ D+T+YG+ + + L Sbjct: 141 KEVHRVNGTMINQSEVAAKFMAD-----QGYKKFAIIHDTTDYGKGHNKYFSEFLKKNGA 195 Query: 196 TPVAVEKYNIKDVDMTAQLLKSKQGGAQAVLTYGIGPELAQIANGMEKLNWHVPIIGSWP 255 T + D + +L K ++ V G+ P +I MEKL G+ Sbjct: 196 TVLGTFGVTADQQDFSTELTKIRELKPDVVYFGGLTPLGVRIRTQMEKLGIKAQFEGTSG 255 Query: 256 LSMGNFIDNSGKNGNGARMPQTFIQDG---NTPKRKAFIEAYQKAYKVDRMPSAVSAAQG 312 + +I G+ A F++ P F YQK K P A Sbjct: 256 IKSDAYIQGVGE--KLAEGSLAFLEGAPWEKIPGGLFFTAQYQKQ-KYSEPPEAYGTFS- 311 Query: 313 YDSILLLAAAIKQAGSTDGEKVRAALENLNTKVEGVVTTYDKPFTHDDHEAIKASMVVMG 372 Y + L+ A+++ G D +KVR L N V T T DDH +V Sbjct: 312 YAAANLIMDAVEKVGP-DRKKVRDVLNNTKN-----VDTLIGKVTFDDHRQNIVPLVTKY 365 Query: 373 EVKNGR 378 V++G+ Sbjct: 366 VVEDGK 371 >gi|134093666|ref|YP_001098741.1| hypothetical protein HEAR0390 [Herminiimonas arsenicoxydans] Length = 429 Score = 66.2 bits (160), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 51/194 (26%), Positives = 104/194 (53%), Gaps = 7/194 (3%) Query: 25 PIKIGVSGPYTGGSAPMGVSMRDGVKLAVAEINAAGGVLGRQIQLVERDDEAKNERGVQI 84 PI+IG+ P G + +G GV+ A INAAGG+ GR+++LV +++ + + + Sbjct: 39 PIRIGIIAPRGGVAGTIGECGLRGVEWTTARINAAGGIGGRKVELVIQEETSPKDT-IDR 97 Query: 85 AQELINKEKVVATVGFINTGVALASQRFYQEAKIPVINNVATGTVITKQFEKEKDNYIFR 144 ++L+ +EKV G +++GV+LA +++++P I T K+ K Y+FR Sbjct: 98 FRKLVLQEKVDCVQGIVSSGVSLALAPAAEDSRMPTIFWDGTTQDGVKE-TMPKPKYVFR 156 Query: 145 TS--AADKIQAKMIADEAVDKQKFSKVAILADSTNYGQLGREDLEKVLADKKV-TPVAVE 201 ++ + + A ++A + K KF ++A + +YG+ + +L + V E Sbjct: 157 STDNECEAVMASLLAIKHF-KGKFKRIACVNPDYSYGRNTWTAFQALLKKYGIEHEVVSE 215 Query: 202 KYN-IKDVDMTAQL 214 +++ I ++D+T+ + Sbjct: 216 QWSKIGNLDLTSNV 229 >gi|134094935|ref|YP_001100010.1| putative extracellular ligand-binding receptor [Herminiimonas arsenicoxydans] Length = 426 Score = 56.2 bits (134), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 74/333 (22%), Positives = 150/333 (45%), Gaps = 27/333 (8%) Query: 20 SQAADPIKIGVSGPYTGGSAPMGVSMRDGVKLAVAEINAAGGVLGRQIQLVERDDEAKNE 79 ++ AD I +GV+ TG A +G +L ++N GG+LG+Q+++ DD+++ + Sbjct: 64 ARPADIIHLGVTVSKTGKYAALGAMNEKAYRLWERDVNRRGGLLGKQVKITMLDDKSEAD 123 Query: 80 RGVQIAQELINKEKVVATVGFINTGVALASQRFYQEAKIPVINNVATGTVITKQFEKEKD 139 + ++LI +KV +G ++ + A + ++P++ + A+ I +Q Sbjct: 124 LAGNLYRKLIIDDKVDLVLGPYSSDLTEAVANITELHRMPLLASGASADSIWQQGR---- 179 Query: 140 NYIFRTS-AADKIQAKMIADEAVDKQKFSKVAILADSTNYGQ---LGREDLEKVLADKKV 195 NY+F + K + E + K +++AI+A ++ Q +G + K + V Sbjct: 180 NYVFGIYVTSSKYSVGFL--ELLVKSGINRIAIVAADDSFSQSISIGTAEWAKRYELQMV 237 Query: 196 TPVAVEK--YNIKDVDMTAQLLKSKQGGAQAVLTYGIGPELAQIANGMEKLNW----HVP 249 +K +I+D A+L GA+AV+ G + ++ + W + Sbjct: 238 LSATFKKGSADIRDSIQAARL-----AGAEAVIVAGHFDDAVNGRRALKDIGWTPKAYYA 292 Query: 250 IIGSWPLSMGNFIDNSGKNGNGARMPQTFIQDGNTPKRKAFIEAYQKAYKVDRMPSAVSA 309 +G ++ F D + N + P + F ++++ Y + +PS +A Sbjct: 293 TVGP---AIQKFSDTLKDDANYTYSTSQWEPTLPYPGAREFALSFREEYGI--LPSYHAA 347 Query: 310 AQGYDSILLLAAAIKQAGSTDGEKVRAALENLN 342 + +L AAI++ S D EK+R AL L+ Sbjct: 348 SAYAAG-QILEAAIRKIKSIDREKLRHALSRLD 379 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.314 0.130 0.356 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 688,751 Number of extensions: 28158 Number of successful extensions: 91 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 83 Number of HSP's successfully gapped: 7 Length of query: 383 Length of database: 1,000,347 Length adjustment: 83 Effective length of query: 300 Effective length of database: 726,862 Effective search space: 218058600 Effective search space used: 218058600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 129 (54.3 bits)