BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1642.p
         (558 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095015|ref|YP_001100090.1| putative electron transfer flav...   921   0.0  

>gi|134095015|ref|YP_001100090.1| putative electron transfer
           flavoprotein-ubiquinone oxidoreductase [Herminiimonas
           arsenicoxydans]
          Length = 562

 Score =  921 bits (2381), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/562 (80%), Positives = 506/562 (90%), Gaps = 4/562 (0%)

Query: 1   MTST----QDLLAQYGPRESMEYDVVIVGGGPAGLSAAIRLKQLAAQQHREVAVCVLEKG 56
           MT T      LLAQYGPRE+MEYDVVIVGGGPAGL+AAIRLKQLAA+Q+ EV+VC+LEKG
Sbjct: 1   MTQTLLPESSLLAQYGPREAMEYDVVIVGGGPAGLAAAIRLKQLAAEQNHEVSVCILEKG 60

Query: 57  SEVGAHILSGAVMDPRALTELIPDWKEQGAPLHTPVSEDRFLFLSATKAYKTPNWLLPTC 116
            E+GAHILSGAVMDP+ALTEL+PDWKE GAPL+TPVSEDRFLFL+ +KAYKTPN+LLP C
Sbjct: 61  GELGAHILSGAVMDPQALTELLPDWKELGAPLNTPVSEDRFLFLTESKAYKTPNFLLPAC 120

Query: 117 FQNHGNYVISLSNVTRWLGQQAEALGVEIFPGFPAAEVLYHEDGSVKGVATGNLGINKEG 176
           FQNHGNYV+SL+NV RWLGQQAEALGVE+FPGFPAAE+LY+EDGSVKGVATGN+GI++ G
Sbjct: 121 FQNHGNYVVSLANVVRWLGQQAEALGVEVFPGFPAAEILYNEDGSVKGVATGNMGIDRAG 180

Query: 177 EPTAEFQLGMELHAKYTFFAEGARGHLGKQVIAKYQLDEGRDPQTYAIGIKELWEVKPEV 236
           +PTA FQLGMELHAKYT FAEG+RGHLGKQ++ K+ L++ + PQTY IGIKELWE+ P +
Sbjct: 181 QPTAAFQLGMELHAKYTLFAEGSRGHLGKQLMEKFNLNQDKAPQTYGIGIKELWEIDPAL 240

Query: 237 HQPGLVVHTAGWPLPHDTYGGSFLYHLENNQVAVGYVVGLAYQNPYLSPFEEFQRYKTHP 296
           HQ GLV+HTAGWPL +DTYGGSFLYHLENNQVAVGYVVGL Y NPYLSPFEEFQRYKTHP
Sbjct: 241 HQAGLVIHTAGWPLKNDTYGGSFLYHLENNQVAVGYVVGLGYANPYLSPFEEFQRYKTHP 300

Query: 297 EIRKFFEGGKRLSYGARAITAGGVQSLPKLVFPGGALLGCDAGFLNASRIKGSHAAIKSG 356
           EI KFF+GGKR+SYGARAITAGG+QSLPKLVF GGAL+GC+AGFLN SRIKGSHAAIKSG
Sbjct: 301 EISKFFKGGKRISYGARAITAGGLQSLPKLVFGGGALIGCEAGFLNGSRIKGSHAAIKSG 360

Query: 357 MLAAEAAFQALGENRQGDELAAYPAAFDASWLKEELHKARNFKPSMSRGLVSGTLLVGID 416
           MLAA+AAF AL   RQ DEL+AYPAAF+ SWL EELH ARNFKP MS+GL +G+++ GID
Sbjct: 361 MLAADAAFTALAAGRQYDELSAYPAAFEQSWLHEELHVARNFKPWMSKGLYTGSIMFGID 420

Query: 417 QVLFGGKAPWTLRHTHADHECLRPASDFAPIAYPKPDGKLTFDRLSSVFISNTNHGEDQP 476
           Q+L  GKAPWTLR+THADHECLRPA+ F PIAYPKPD  LTFDRLSSVFISNTNH EDQP
Sbjct: 421 QLLLRGKAPWTLRNTHADHECLRPAAAFQPIAYPKPDNVLTFDRLSSVFISNTNHAEDQP 480

Query: 477 AHLTLKDKNVPVQINLAKYAGPEARYCPAGVYEFVKNEDHSDRLQINAQNCVHCKTCDIK 536
            HLTLKD  VPVQ+NLA+YAGPEARYCPA VYEF+K+E  +D+LQINAQNCVHCKTCDIK
Sbjct: 481 IHLTLKDPAVPVQVNLAEYAGPEARYCPAAVYEFIKDEAGADKLQINAQNCVHCKTCDIK 540

Query: 537 DPTQNIVWVTPEGGGGPNYSGM 558
           DPTQNIVWVTPEGGGGPNY  M
Sbjct: 541 DPTQNIVWVTPEGGGGPNYPNM 562


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.136    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,211,523
Number of extensions: 54133
Number of successful extensions: 145
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 1,000,347
Length adjustment: 86
Effective length of query: 472
Effective length of database: 716,977
Effective search space: 338413144
Effective search space used: 338413144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)