BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1637.p (696 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095020|ref|YP_001100095.1| NADH dehydrogenase I subunit L ... 1109 0.0 gi|134096164|ref|YP_001101239.1| putative monovalent cation/H+ a... 199 4e-52 gi|134095018|ref|YP_001100093.1| NADH dehydrogenase I subunit N ... 96 6e-21 gi|134095019|ref|YP_001100094.1| NADH dehydrogenase I subunit M ... 73 4e-14 >gi|134095020|ref|YP_001100095.1| NADH dehydrogenase I subunit L [Herminiimonas arsenicoxydans] Length = 687 Score = 1109 bits (2868), Expect = 0.0, Method: Compositional matrix adjust. Identities = 558/693 (80%), Positives = 608/693 (87%), Gaps = 10/693 (1%) Query: 1 MAGQLNPHLLLAVPLAPLAGSAIAGLLGTKFFGNVVGRKVSHTATILGVLIAAIISIQTL 60 MAGQLNPHLLL VPLAPLAGS IAGL GTKFFGN++GRK SH+ TILGVLIA I+S+ T+ Sbjct: 1 MAGQLNPHLLLIVPLAPLAGSLIAGLFGTKFFGNLIGRKASHSVTILGVLIAFILSLHTM 60 Query: 61 LAVLDGATYNGTLYNWMTVAGIKLEIGFMVDSLTAMMMCVVTFVSLMVHIYTIGYMAEDE 120 VLDGAT+N +LY WMTVAG+KLE+GF++DSLTAMMMCVVTFVSLMVHIYTIGYM EDE Sbjct: 61 SLVLDGATFNDSLYTWMTVAGLKLEVGFLIDSLTAMMMCVVTFVSLMVHIYTIGYMEEDE 120 Query: 121 GYNRFFSYISLFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFWYTRPTAIKANMKAF 180 GYNRFFSYISLFTF+MLMLVMSNNFLQLFFGWEAVGLVSYLLIGFWYT+PTA+ ANMKAF Sbjct: 121 GYNRFFSYISLFTFAMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFWYTKPTAVVANMKAF 180 Query: 181 LVNRVGDFGFILGIGLLLAYAGSMNYSEVFAKRAELVQLTLPGTDWMLLTVACICLFVGA 240 LVNR+GDFGFILGIGLLLAYAGSM+Y+EVFAK+ EL LTLPGTDWMLLTVACICLF+GA Sbjct: 181 LVNRIGDFGFILGIGLLLAYAGSMDYAEVFAKKDELALLTLPGTDWMLLTVACICLFIGA 240 Query: 241 MGKSAQFPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVTRMSPLFELSDTALSFILVI 300 MGKSAQFPLHVWLPDSMEGPTPISALIHAATMVTAGIFMV RMSPLFELSDTALSFIL+I Sbjct: 241 MGKSAQFPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVARMSPLFELSDTALSFILII 300 Query: 301 GAITALFMGFLGTMQNDIKRVVAYSTLSQLGYMTVALGASAYSVAVFHLMTHAFFKALLF 360 G+ITALFMGFLG +QNDIKRVVAYSTLSQLGYMTVALGASAYSVAVFHLMTHAFFKALLF Sbjct: 301 GSITALFMGFLGIIQNDIKRVVAYSTLSQLGYMTVALGASAYSVAVFHLMTHAFFKALLF 360 Query: 361 LGAGSVIIGMHHDQDMRNMGGLRKYMPITWITSLLGSLALIGTPFFSGFYSKDSIIEAAA 420 L AGSVIIGMHHDQD+RNMGGLRKYM ITWITSLLGSLALIGTP FSGFYSKDSIIEA Sbjct: 361 LAAGSVIIGMHHDQDIRNMGGLRKYMKITWITSLLGSLALIGTPLFSGFYSKDSIIEAVH 420 Query: 421 ESHLPGSGFAYFAVLASVFVTAFYSFRMYFMVFHGKERFGQAPAHDDHHAPAAAHGVHDD 480 +HL G+GFA FAVLA VFVTAFYSFRMYF+VFHG+ERFG+ AHDD A Sbjct: 421 ATHLAGAGFANFAVLAGVFVTAFYSFRMYFLVFHGEERFGKPHAHDDPAHDDHA------ 474 Query: 481 HGHDAHDDHGHDEHHHGLAPGQKPHESPLVVTLPLILLAIPSVIIGFFAISPMLYGDFFK 540 A D+HG D HHGLAPGQKPHESP VVTLPLILLAIPSV+IG+FAI PML+GDFFK Sbjct: 475 ---HADDEHG-DAAHHGLAPGQKPHESPWVVTLPLILLAIPSVVIGYFAIEPMLHGDFFK 530 Query: 541 GVIFFGENHKVMEELSHEYHGPLAMVLHAFTTAPLWLAIAGVVVAYYCYMINPRVPAWFK 600 GVI H M EL+ +HG +AM +H TAP WLA+AGV AYYCYMINPRVPAWF Sbjct: 531 GVITVDPKHGGMAELNEMFHGAMAMAIHGLQTAPFWLALAGVASAYYCYMINPRVPAWFF 590 Query: 601 EKFSIIYTILDNKYYMDKFNEVVFAGGARLLGNGLSIVGDRGIIDGLFVNGSAKVVGWFS 660 + F +YT+LDNKYYMDKFNEVV A GAR+LG G S VGD+ +IDGL VNGSAK+VGWFS Sbjct: 591 KNFHALYTLLDNKYYMDKFNEVVIARGARVLGGGFSNVGDKTLIDGLIVNGSAKLVGWFS 650 Query: 661 KFTRLWQSGYIYHYAFVMIIGVLGFLVWFMPFP 693 R Q+GYIYHYAFVMI+GVLGFL++F+PFP Sbjct: 651 GIVRTLQTGYIYHYAFVMILGVLGFLIYFLPFP 683 >gi|134096164|ref|YP_001101239.1| putative monovalent cation/H+ antiporter subunit A [Herminiimonas arsenicoxydans] Length = 974 Score = 199 bits (506), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 157/456 (34%), Positives = 238/456 (52%), Gaps = 31/456 (6%) Query: 9 LLLAVPLAPLAGSAIAGLLGTKFFGNVVGRK--VSHTATILGVLIAAIISIQTLLAVLDG 66 LLLA+ +AP GS IA + N R+ ++ + G+L++A + Q + + Sbjct: 9 LLLAIVVAPFIGSVIAACMP----ANARNRESILAGGVALFGLLVSAYLYQQ--VGSGEI 62 Query: 67 ATYNGTLYNWMTVAGIKLEIGFMVDSLTAMMMCVVTFVSLMVHIYTIGYMAEDEGYNRFF 126 Y WM G+ + +D L + + +V V L+V +Y YM+E + RFF Sbjct: 63 VRYQAA---WMPAFGVDFVL--RMDGLAWLFVMLVLGVGLLVVLYARYYMSEQDPVPRFF 117 Query: 127 SYISLFTFSMLMLVMSNNFLQLFFGWEAVGLVSYLLIGFWYTRPTAIKANMKAFLVNRVG 186 S++ F SML +V+S N +QL WE + S+LLIG+W+ R A + AF V G Sbjct: 118 SFLLAFMGSMLGVVLSGNLIQLVVFWELTSITSFLLIGYWHHRIDARRGARMAFTVTATG 177 Query: 187 DFGFILGIGLLLAYAGSMNYSEVFAKRAELVQLTLPGTDWMLLTVACICLFVGAMGKSAQ 246 + G+ ++ GS + V A ++ DW L A I + +GA+ KSAQ Sbjct: 178 GLCLLCGVLIIGHIVGSYDLEVVLAAGDKI-----RAHDWYL--AALILVALGALTKSAQ 230 Query: 247 FPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVTRMSPLFELSDTALSFILVIGAITAL 306 FP H WLP +M PTP+S+ +H+ATMV AG+F++ R P+ ++ I G T L Sbjct: 231 FPFHFWLPHAMAAPTPVSSYLHSATMVKAGVFLLMRFWPVLSGTEEWAWIIAGAGVCTLL 290 Query: 307 FMGFLGTMQNDIKRVVAYSTLSQLGYMTVALGASA---YSVAVFHLMTHAFFKALLFLGA 363 F+ Q+D+K ++AYST+S LG +TV LG + A+FH + HA FKA LF+ A Sbjct: 291 LGSFVAIFQHDLKGLLAYSTISHLGLITVLLGIGSPLGMVAAIFHTVNHAIFKASLFMAA 350 Query: 364 GSVIIGMHHDQDMRNMGGLRKYMPITWITSLLGSLALIGTPFFSGFYSKDSIIEAAAESH 423 G +I +DMR + GLR +PIT +++ S A+ G P +GF SK+ AE+ Sbjct: 351 G-IIDHETGTRDMRVLRGLRHGLPITARLAVVASAAMAGVPLLNGFLSKEMFF---AETA 406 Query: 424 LPG---SGFAYFAVLASVFVTAFYSFRMYFMVFHGK 456 L G S + +A LA + YS R + VF G+ Sbjct: 407 LVGGTESWWMSYAALAMGIFSVTYSLR-FISVFFGR 441 >gi|134095018|ref|YP_001100093.1| NADH dehydrogenase I subunit N [Herminiimonas arsenicoxydans] Length = 494 Score = 95.9 bits (237), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 110/378 (29%), Positives = 179/378 (47%), Gaps = 61/378 (16%) Query: 110 IYTIGYMAEDEGYN-RF---FSYISLFTFSMLMLVMS-NNFLQLFFGWEAVGLVSYLLIG 164 +Y+ Y+ + + N R F +SLFT M++MS NNFL ++ G E + L Y L+ Sbjct: 91 VYSRQYLEDRQMVNGRLGGEFYILSLFTVLGQMVMMSANNFLIIYLGLEIMSLSLYALVA 150 Query: 165 FWYTRPTAIKANMKAFLVNRVGDFGFIL-GIGLLLAYAGSMNYSEVFAKRAELVQLTLPG 223 F AI+A MK F++ + GF+L GI +L GS++ +EV A+ + P Sbjct: 151 FRRDNAVAIEAAMKYFVLGALAS-GFLLYGISMLYGATGSLDLTEV-ARVIATGAVNKP- 207 Query: 224 TDWMLLTVACICLFVGAMGKSAQFPLHVWLPDSMEG-PTPISALIHAATMVTA---GIFM 279 +L + + G K P H+W+PD +G PT ++ ++ A + A I + Sbjct: 208 ----VLIFGLVFVVAGLAFKLGAVPFHMWVPDVYQGAPTAVTLMLGGAPKLAAFAITIRL 263 Query: 280 VTRMSPLFELS----DTALSFI-LVIGAITALFMGFLGTMQNDIKRVVAYSTLSQLGYMT 334 + P + T LS + + IG ITA+ MQ +IKR++AYST+SQ+G++ Sbjct: 264 LVEALPALAIDWQQMLTILSVLSMAIGNITAI-------MQTNIKRMLAYSTISQVGFIL 316 Query: 335 VAL----------------GASAYSVAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRN 378 + L GA+ + V + L T F ++ L G D ++ + Sbjct: 317 LGLLSGVVAGADGSTTNGYGAAMFYVITYVLTTLGMFGVIMLLSRA----GFEAD-NIDD 371 Query: 379 MGGLRKYMPITWITSLLGSLALIGTPFFSGFYSKDSIIEAAAESHLPGSGFAYFAVLASV 438 GL + P +LL +L G P GFY+K ++++A +G + AV+A + Sbjct: 372 FKGLNQRSPWFAFVTLLLMFSLAGVPPVVGFYAKLAVLQAVLS-----TGQIWLAVVAVL 426 Query: 439 F--VTAFYSFR----MYF 450 F + AFY R MYF Sbjct: 427 FSLIGAFYYLRVVKVMYF 444 >gi|134095019|ref|YP_001100094.1| NADH dehydrogenase I subunit M [Herminiimonas arsenicoxydans] Length = 496 Score = 73.2 bits (178), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 89/392 (22%), Positives = 189/392 (48%), Gaps = 26/392 (6%) Query: 39 KVSHTATILGVLIAAIISIQTLLAVLDGATYNGTL---YNWMTVAGIKLEIGFMVDSLTA 95 V+ + +++G +++ ++++ L+ D A + + W+ + I +G VD L+ Sbjct: 33 NVARSVSLVGAIVSFLVTLP-LIQKFDNAAHGMQFVEKFKWIDIFNINYSLG--VDGLSM 89 Query: 96 MMMCVVTFVSLMVHIYTIGYMAEDEGYNRFFSYISLFTFSMLMLVMSNNFLQLFFGWEAV 155 + + F+++ V I G+ ++ ++ + + M+ + + + L + +E+ Sbjct: 90 WFVVLTAFITIFVVI--AGWEVIEKRVGQYMGAFLILSGLMIGVFCALDGLLFYVFFEST 147 Query: 156 GLVSYLLIGFWYTRPTAIKANMKAFLVNRVGDFGFILGIGLLLAYAGSMNYSEVFAKRAE 215 + +++IG W + A++K FL G ++ + LL Y S + ++ A Sbjct: 148 LIPMFIIIGVW-GGANRVYASIKFFLYTFFGSL--LMLVALLYLYFKSGHSFDILAWH-- 202 Query: 216 LVQLTLPGTDWMLLTVACICLFVGAMGKSAQFPLHVWLPDS-MEGPTPISALIHAATMVT 274 L LP +L+ +A + F K +P+H WLPD+ +E PT +++ AA M+ Sbjct: 203 --TLPLPMDAQILIFLAFLMAFAV---KVPMWPVHTWLPDAHVEAPTG-GSVVLAAIMLK 256 Query: 275 AGIFMVTRMS-PLFELSDTALS-FILVIGAITALFMGFLGTMQNDIKRVVAYSTLSQLGY 332 G + R S P+ + LS F++ + I +++G + +Q D+K++VAYS+++ +G+ Sbjct: 257 LGAYGFLRFSLPITPDASHYLSGFMITLSLIAVIYIGLVALVQKDMKKLVAYSSIAHMGF 316 Query: 333 MTVA---LGASAYSVAVFHLMTHAFFKALLFLGAGSVIIGMHHDQDMRNMGGLRKYMPIT 389 +T+ A + +++H F +FL G V+ H +++ + GG+ MP Sbjct: 317 VTLGFFMFNDMAVQGGIAQMISHGFVSGAMFLCIG-VLYDRMHTRNIADYGGVVNTMPKF 375 Query: 390 WITSLLGSLALIGTPFFSGFYSKDSIIEAAAE 421 +L S+ G P SGF + +I A + Sbjct: 376 AAFFVLFSMGNAGLPATSGFVGEFMVILGAVQ 407 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.329 0.142 0.444 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,216,412 Number of extensions: 48730 Number of successful extensions: 208 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 200 Number of HSP's successfully gapped: 5 Length of query: 696 Length of database: 1,000,347 Length adjustment: 88 Effective length of query: 608 Effective length of database: 710,387 Effective search space: 431915296 Effective search space used: 431915296 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 132 (55.5 bits)