BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1632.p (772 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095025|ref|YP_001100100.1| NADH dehydrogenase I subunit G ... 1197 0.0 gi|134096579|ref|YP_001101654.1| NAD dependent formate dehydroge... 223 3e-59 gi|134093636|ref|YP_001098711.1| NAD dependent formate dehydroge... 182 6e-47 gi|134093705|ref|YP_001098780.1| putative periplasmic assimilato... 60 5e-10 >gi|134095025|ref|YP_001100100.1| NADH dehydrogenase I subunit G [Herminiimonas arsenicoxydans] Length = 777 Score = 1197 bits (3098), Expect = 0.0, Method: Compositional matrix adjust. Identities = 592/777 (76%), Positives = 651/777 (83%), Gaps = 7/777 (0%) Query: 1 MVEIEIDGKKVEVQEGSMVMDAANKIGTYIPHFCYHKKLSIAANCRMCLVEVEKAPKPLP 60 MVEIEIDGKKVEV+ GSMVMDAANKIGTYIPHFCYHKKLSIAANCRMCLVEVEKAPKPLP Sbjct: 3 MVEIEIDGKKVEVEAGSMVMDAANKIGTYIPHFCYHKKLSIAANCRMCLVEVEKAPKPLP 62 Query: 61 ACATPVNNGMIVRTASDKAVKAQKGVMEFLLINHPLDCPICDQGGECQLQDLAVGYGGST 120 ACATPV GMIVR+ S+KAV+AQKGVMEFLLINHPLDCPICDQGGECQLQDLAVGYG ST Sbjct: 63 ACATPVTPGMIVRSHSEKAVQAQKGVMEFLLINHPLDCPICDQGGECQLQDLAVGYGEST 122 Query: 121 SRYEEEKRVVEPKDVGPLISMKEMNRCIHCTRCVRFGQEVAGVMELGMLGRGEHSEITTF 180 SRY EEKRVV PKDVGPLISM+EM+RCIHCTRCVRFGQEVAGVME GMLGRGEH+EIT+F Sbjct: 123 SRYAEEKRVVVPKDVGPLISMQEMSRCIHCTRCVRFGQEVAGVMEFGMLGRGEHAEITSF 182 Query: 181 VGKTVDSELSGNMIDLCPVGALTSKPFRYSARTWELSRRKSVSPHDSVGANLIVQVKNGK 240 VGKTVDSELSGNMIDLCPVGALTSKPFRYSARTWELSRRKSVSPHD +GANL+VQVK GK Sbjct: 183 VGKTVDSELSGNMIDLCPVGALTSKPFRYSARTWELSRRKSVSPHDGLGANLVVQVKAGK 242 Query: 241 VMRVLPFENEEVNECWISDKDRFAYEALNSAERLTKPMLKQDGKWQEVDWQTALEYVAHG 300 VMRVLP EN++VNECWISDKDRF+YE LNS ERLT PM+KQDGKWQE DWQTALEYVAHG Sbjct: 243 VMRVLPLENDDVNECWISDKDRFSYEGLNSEERLTSPMIKQDGKWQETDWQTALEYVAHG 302 Query: 301 LRNIRHEHGADAIAALGTPYSTLEELNLLQKVVRGVGSENVDFRLRQSDFALDGQIKPWL 360 LRNI+HEHGA+AIAAL TP STLEEL+LL K+VRG+GS NVDFRLRQ+D D I PWL Sbjct: 303 LRNIKHEHGAEAIAALATPDSTLEELSLLGKLVRGMGSNNVDFRLRQADALPDASITPWL 362 Query: 361 GMSIVEFSQLNRVFVIGSFLRKDHPLLSARLRQSAKSGAKVSVLHATDDDLLMPIANKII 420 GMSI EF+ L R FVIGSFLRKDHPLL+ARLRQ+ K GA VS+LHATDDDLLMP+ANK+I Sbjct: 363 GMSINEFAGLKRAFVIGSFLRKDHPLLAARLRQAVKQGANVSILHATDDDLLMPVANKMI 422 Query: 421 AAPSAWLSALAEVAVAVAQAKGIAAPAAYAGVAASEAAKATAASLLSGDAKGVFLGNAAV 480 APS WL+AL+EV AVAQAKG+ APA + + AS AK AASLLSG+ K V LGNA + Sbjct: 423 KAPSDWLAALSEVVAAVAQAKGMTAPAGFENIQASAEAKQIAASLLSGEPKAVLLGNAVL 482 Query: 481 QHPQAAQLHVAAQWIAEQTGAKLGVLTEGGNAVGAYLANAVPAPGKAAAVFAQPRKAYLL 540 QHPQAAQLH AAQWIA+ T AK G LTE N+VG Y+A A AA +FAQPRKA+LL Sbjct: 483 QHPQAAQLHAAAQWIAQNTEAKFGFLTEAANSVGGYVAGANSV--SAAQIFAQPRKAFLL 540 Query: 541 LNAEPELDSYDPQAARAALNQADMVVVMSAFQHGADYADVLLPIAPFTETSGTFVNAEGR 600 LNAEPELD+++PQ AR AL QA+MVVVMS F+H AD+ADVLLPIAPF+ETSGTFVN EGR Sbjct: 541 LNAEPELDTFNPQVARRALEQAEMVVVMSPFKHSADFADVLLPIAPFSETSGTFVNCEGR 600 Query: 601 AQSFNGTVKPAGDARPGWKVLRVLGNLLELENFDYETSESIRDELLG----KEVDLSARL 656 AQSFNGTVKP GD RP WKVLRVLGNL L+ F+YETSE+IR+E+LG + +L+A L Sbjct: 601 AQSFNGTVKPLGDTRPAWKVLRVLGNLTGLQGFEYETSEAIRNEILGVNAPADANLTAHL 660 Query: 657 NNTA-AQQAQTVTAVAGSLERVADVPIYFADAIARRSPPLLETRDGQAPKAWLSAALAAQ 715 NN A A SLER ADV IY DAI RR+P L ET D P+AWLS+ LAA+ Sbjct: 661 NNFGKTAPQAATAATASSLERAADVSIYATDAIVRRAPALQETSDAAVPQAWLSSELAAK 720 Query: 716 LGVAEGDQVTVKQGSGSAALTAAIDKKLPENVVRVAAAHASTAALGGMFGAIVVEKA 772 LGV GDQV V QG GSA L AAI LP NVVRVAA TA+LG MFG+I VEKA Sbjct: 721 LGVGAGDQVKVTQGEGSAMLIAAIASGLPANVVRVAAGRQETASLGAMFGSISVEKA 777 >gi|134096579|ref|YP_001101654.1| NAD dependent formate dehydrogenase subunit alpha fdsA [Herminiimonas arsenicoxydans] Length = 956 Score = 223 bits (567), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 199/731 (27%), Positives = 315/731 (43%), Gaps = 92/731 (12%) Query: 1 MVEIEIDGKKVEVQEGSMVMDAANKIGTYIPHFCYHKKLSIAANCRMCLVEVEKAPKPLP 60 MV +EIDG ++ V +G+ VM AA ++G +P C L +CR+CLVE+E Sbjct: 19 MVTLEIDGVEITVPQGTSVMRAAAEVGINVPKLCATDSLEAFGSCRLCLVEIEGRRGYPA 78 Query: 61 ACATPVNNGMIVRTASDKAVKAQKGVMEFLLINHPLDCPICDQGGECQLQDLA--VGYGG 118 +C TP GM ++T + K ++GVME + +HPLDC C G C+LQD+A VG Sbjct: 79 SCTTPAEAGMKIKTQTPKLADIRRGVMELYISDHPLDCLTCPTNGNCELQDMAGVVGLRD 138 Query: 119 STSRYEEEKRVVEPKDVGPLISMKEMNRCIHCTRCVRFGQEVAGVMELGMLGRGEHSEIT 178 Y+ E + KD + ++CI C RCVR +E G L + GRG S + Sbjct: 139 VRYGYDGENHLKLEKDESNPYFTYDASKCIVCNRCVRACEETQGTFALTIDGRGFASRVA 198 Query: 179 TFVGKT-VDSEL--SGNMIDLCPVGALTSKPFRYSARTWELSRRKSVSPHDSVGANLIVQ 235 ++ ++SE G +D CP LT K + E S+ + + + VG + + Sbjct: 199 ASQNESFIESECVSCGACVDACPTATLTEKTVIMMGQG-EHSKITTCA-YCGVGCSFKAE 256 Query: 236 VKNGKVMRVLPFENEEVNECWISDKDRFAYEALNSAERLTKPMLKQ--DGKWQEVDWQTA 293 +K +V+R++P + + N+ K RFA+ +R+ KPM++ W+EV W+ A Sbjct: 257 MKGNEVVRMVPNPDGKANQGHACVKGRFAWGYATHKDRMLKPMIRSKISDPWREVSWEEA 316 Query: 294 LEYVAHGLRNIRHEHGADAIAALGTPYSTLEELNLLQKVVR-GVGSENVDFRLRQSDFAL 352 + Y A + I+ ++G D+I L + T EE L+QK+VR G+ NVD R Sbjct: 317 INYTASEFKRIQAKYGKDSIGGLVSSRCTNEEGYLVQKLVRAAFGNNNVDTCARVCHSPT 376 Query: 353 DGQIKPWLGMS--IVEFSQLNR---VFVIGSFLRKDHPLLSARLRQSAKSGAKVSVLHAT 407 +K LG S F + + + VIG+ HP+ ++++++ + GAK+ V+ Sbjct: 377 GYGLKVTLGESAGTQTFESVMKSDVIVVIGANPVNAHPVFASQMKRRIRQGAKLIVVDPR 436 Query: 408 DDDL-------------LMPIANKIIAAPSAWL------------------SALAEVAVA 436 ++ LMP N I A++ + E Sbjct: 437 TTEMVKSPHVQADYHLKLMPGTNVAIVNALAYVILSEKLHKPEFIAERCEADSFKEWEHF 496 Query: 437 VAQAKGIAAPAAYAGVAASEAAKATAASLLSGDAKG--VFLGNAAVQHPQAAQLHVAAQW 494 + Q + +P A ++ A AA+ + +AK ++ G +H Q + + Sbjct: 497 ILQEEN--SPEAVEKISGVPAEDIRAAARMYANAKNGSIYYGLGVTEHAQGSTTVIGIAN 554 Query: 495 IAEQTG--AKLGV----LTEGGNAVGAYLANAVPA--PGKAAAVFAQPRKAY-----LLL 541 +A TG + GV L N G+ + P PG + R + +L Sbjct: 555 LAMATGNVGREGVGVNPLRGQNNVQGSCDMGSFPHELPGYRHVSDSTTRAEFEAAWNCVL 614 Query: 542 NAEPEL--------------------------DSYDPQAARAALNQADMVVVMSAF-QHG 574 + EP L D Q AAL+ + +VV F Sbjct: 615 DPEPGLRIPNMFDAAMDGTFMGLYCQGEDIVQSDPDTQHVTAALSAMECIVVQDIFLNET 674 Query: 575 ADYADVLLPIAPFTETSGTFVNAEGRAQSFNGTVKPAGDARPGWKVLRVLGNLLELENFD 634 A YA V LP + F E GTF NAE R V P + W+V +L N L Sbjct: 675 AKYAHVFLPGSSFLEKDGTFTNAERRISRVR-KVMPPKAGKGDWEVTCMLSNALGYP-MS 732 Query: 635 YETSESIRDEL 645 Y+ I DE+ Sbjct: 733 YKHPREIMDEI 743 >gi|134093636|ref|YP_001098711.1| NAD dependent formate dehydrogenase subunit alpha Fdh1A [Herminiimonas arsenicoxydans] Length = 946 Score = 182 bits (461), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 213/892 (23%), Positives = 352/892 (39%), Gaps = 150/892 (16%) Query: 2 VEIEIDGKKVEVQEGSMVMDAANKIGTYIPHFCYHKKLSIAANCRMCLVEVEKAPKPLPA 61 V E++G++V + ++ A + G IPH C+ + + A NCR C+VE+ P+ Sbjct: 17 VTFELNGREVTGRATDTILTVAKREGIEIPHLCFKEGMDTAGNCRACVVEINGERVLAPS 76 Query: 62 CATPVNNGMIVRTASDKAVKAQKGVMEFLLINHPLDCPICDQGGECQLQDLAVGYGGSTS 121 C NGM V T S++AVK+QK V+E L D P D ++ + A Sbjct: 77 CCRNPTNGMKVNTESERAVKSQKLVLELLQ----SDMPETDYTRHNEVDEWAAKMEVGKP 132 Query: 122 RYEEEKRVVEPKDVGPLISMKEMNRCIHCTRCVRFGQEVAGVMELGMLGRGEHSEITTFV 181 R+E RV P P +++ ++ CI CTRCVR ++ +G+ RG+H++I + Sbjct: 133 RFEARARVA-PDFSHPAMTVN-LDACIQCTRCVRACRDEQENDVIGLAFRGDHAKIVFDM 190 Query: 182 GKTVDSEL---SGNMIDLCPVGALTSKPFRYSARTWELSRRKSVSPHDSVGANLIVQVKN 238 + + G + CP GAL P R + SV P+ VG L +K+ Sbjct: 191 DDPMGASTCVACGECVQACPTGALM--PARDVGMNVPDKQVDSVCPYCGVGCQLTYNIKD 248 Query: 239 GKVMRVLPFENEEVNECWISDKDRFAYEALNSAERLTKPMLKQDGK-------------- 284 K++ V + N + K R+ ++ N RLTKP++++ Sbjct: 249 NKILYV-EGRDGPANRERLCVKGRYGFDYANHPHRLTKPLIRRADAPKRGDFVMDPDRVM 307 Query: 285 --WQEVDWQTALEYVAHGLRNIRHEHGADAIAALGTPYSTLEELNLLQKVVR-GVGSENV 341 ++E W+ ALE IR HG ++A G+ + EE L QK+VR G GS NV Sbjct: 308 EVFREATWEEALEVAGGNFAKIRDTHGKKSLAGFGSAKGSNEEAYLFQKLVRTGFGSNNV 367 Query: 342 DFRLRQSDFA-----LDGQIKPWLGMSIVEFSQLNRVFVIGSFLRKDHPLLSARLRQSAK 396 D R + L+G + +++ ++ V +IG+ +HP+ + ++ + Sbjct: 368 DHCTRLCHASSVVALLEGIGSGAVSNPVMDVTKAEVVIIIGANPTVNHPVAATWIKNAVS 427 Query: 397 SGAKVSVLHATDDDLLMPIANKIIAAPS----AWLSALAEVAVA-------VAQAKGIA- 444 +G K+ V D+ IA++ + + A L+A+ V V +++ I Sbjct: 428 NGTKLIVCDPRRTDMAR-IAHRFMQFKADTDVAMLNAMMNVIVTEGLVDKEFIESRTIGY 486 Query: 445 ----------APAAYAGVAA--SEAAKATAASLLSGDAKGVFLGNAAVQHPQA---AQLH 489 P A + +E + A + A + G QH A+ Sbjct: 487 EELRKNVEGYTPELMAPICGIDAETLRYVARLYATSKASMILWGMGVSQHIHGTDNARCL 546 Query: 490 VAAQWIAEQT---GAKLGVLTEGGNAVGAYLANAVP---------APGKAAAVFAQPRKA 537 +A + Q G L L N GA A +P + K A FA+ Sbjct: 547 IALSLMTGQIGRPGTGLHPLRGQNNVQGASDAGLIPMVYPDYQSVSDPKIRANFAKAWNM 606 Query: 538 YL-LLNAEPELDSY------------------------DPQA--ARAALNQADMVVVMSA 570 + LL+ EP L DP A AR AL D +VV Sbjct: 607 SVDLLDPEPGLTVVEIMHAITDGKIRGLYVQGENPAMSDPDANHAREALAALDHLVVQDI 666 Query: 571 FQHGADY-ADVLLPIAPFTETSGTFVNAEGRAQSFNGTVKPAGDARPGWKVLRVLGNLLE 629 F Y ADV+LP + F E +GTF N + Q + P G+A+ +++ + N L Sbjct: 667 FLTETAYLADVILPASAFPEKTGTFTNTDRTVQMGRQALNPPGEAKQDLWIIQQMANRLG 726 Query: 630 LENFDYETSESIRDELLGKEVDLSARLNNTAAQQAQTVTAVAGSLERVADV--PIYFADA 687 N++Y+ + DE+ ++ ++ + +V E+ D P+ F D+ Sbjct: 727 C-NWNYKHVSEVFDEMRHTMPSIAG----ITWERLEREDSVTYPCEKEGDPGEPVVFVDS 781 Query: 688 IARRSP----------PLLETRDGQAP---------KAWLSAALA--------------- 713 R S P E D + P + W + ++ Sbjct: 782 FPRESGRARFVPADIIPAAERPDTEYPMVLITGRQLEHWHTGSMTRRATVLDSIEPDPIA 841 Query: 714 -------AQLGVAEGDQVTVKQGSGSAALTAAIDKKLPENVVRVAAAHASTA 758 A +G GD +T++ G +L A D P V V + A Sbjct: 842 LIHPLDLANMGGKPGDIITLESRRGEVSLYARADDSSPRGAVFVPFCYYEAA 893 >gi|134093705|ref|YP_001098780.1| putative periplasmic assimilatory nitrate reductase, large subunit [Herminiimonas arsenicoxydans] Length = 944 Score = 59.7 bits (143), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 47/151 (31%), Positives = 77/151 (50%), Gaps = 18/151 (11%) Query: 521 VPA-PGKAA-----AVFAQPRKAYLLLNAEPELDSYDPQAARAALNQADMVVVMSAFQHG 574 VPA PGK+A AV K ++ P + R AL A++V+V A++ Sbjct: 402 VPATPGKSAVEMFEAVRTGEIKIIWIVCTNPAQSMPEQAMIREALRNAELVIVQEAYKTT 461 Query: 575 A--DYADVLLPIAPFTETSGTFVNAEGRAQSFNGTVKPAGDARPGWKV-----LRVLGNL 627 A DYADVLLP + ++E GT N+E R F + G++R W++ R+ G L Sbjct: 462 ASCDYADVLLPASTWSEKEGTVTNSERRITRFKSVLPKLGESRHDWEIAVDFARRLEGAL 521 Query: 628 LELEN-FDYETSESI----RDELLGKEVDLS 653 + + F +E++E I R+ G+++D++ Sbjct: 522 GKQSSIFPFESTEEIWNEHRESTRGRDLDIT 552 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.317 0.131 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,271,482 Number of extensions: 47956 Number of successful extensions: 213 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 200 Number of HSP's successfully gapped: 5 Length of query: 772 Length of database: 1,000,347 Length adjustment: 89 Effective length of query: 683 Effective length of database: 707,092 Effective search space: 482943836 Effective search space used: 482943836 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)