BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1631.p (431 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095026|ref|YP_001100101.1| NADH dehydrogenase I subunit F ... 771 0.0 gi|134096580|ref|YP_001101655.1| NAD dependent formate dehydroge... 283 1e-77 gi|134093635|ref|YP_001098710.1| NAD dependent formate dehydroge... 254 5e-69 >gi|134095026|ref|YP_001100101.1| NADH dehydrogenase I subunit F [Herminiimonas arsenicoxydans] Length = 431 Score = 771 bits (1990), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/431 (83%), Positives = 400/431 (92%) Query: 1 MTCLHDRHIKPLILADLNGENWHLEDYVKRGGYESLKRILNEKITPEQVIADLKASGLRG 60 MT LH+RHIKPLILA L G+NW LE+YVKRGGY SLKRIL+E +T +QVIA++KAS LRG Sbjct: 1 MTSLHNRHIKPLILAGLTGDNWGLEEYVKRGGYASLKRILSEGMTSDQVIAEIKASTLRG 60 Query: 61 RGGAGFPTGLKWSFMPRQFPGQKYLVCNTDEGEPGTFKDRDIIRYNPHSLIEGMIIGGYA 120 RGGAGFP+GLKWSFMP+ + GQKYLVCN+DEGEPGTFKDRDI+RYNPH++IEGM I YA Sbjct: 61 RGGAGFPSGLKWSFMPKNYEGQKYLVCNSDEGEPGTFKDRDILRYNPHAVIEGMAIAAYA 120 Query: 121 MGITVGYNYIHGEIFAEYLRFEEALEEARAAGFLGDNILGTDFSFQLHAHHGYGAYICGE 180 MG++VGYNYIHGEIFAEY RFEEALE+ARAAGFLGD ILG+ +SFQLHA HGYGAYICGE Sbjct: 121 MGVSVGYNYIHGEIFAEYARFEEALEQARAAGFLGDRILGSAYSFQLHAFHGYGAYICGE 180 Query: 181 ETALLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPFIFKVGPQAYAEMGKP 240 ETALLES+EGKKGQPRFKPPFPAS+GLYGKPTTINNTETFAAVPFIF+VG AYA MGKP Sbjct: 181 ETALLESIEGKKGQPRFKPPFPASYGLYGKPTTINNTETFAAVPFIFQVGADAYAAMGKP 240 Query: 241 NNGGTKIFSVSGDVERPGNYEIPLGTPFSTLLELAGGMRGGKKIKAVIPGGSSAPVIRGE 300 NNGGTKIFSVSGDVE PGNYEIPLGTPF+ LL+LAGG+RGGKK+KAVIPGGSS PV++G+ Sbjct: 241 NNGGTKIFSVSGDVENPGNYEIPLGTPFAELLKLAGGVRGGKKLKAVIPGGSSVPVVKGD 300 Query: 301 VMMDTTMDYDAIAKAGSMLGSGAVTVMDETRCMVKSLLRLSYFYHEESCGQCTPCREGTG 360 +MM T MDYD++AKAGSMLGSGAV VMDETRCMVKSLLRLSYFY EESCGQCTPCREGTG Sbjct: 301 LMMATDMDYDSVAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTG 360 Query: 361 WMYRLVNRIENGHGKMEDLDVLNSVADNIQGRTICALGDAAAMPVRAFVKNFREEFEYHI 420 W+YR+V+RIENG G+ EDLD+LNS+ADNIQGRTICALGDAAAMPVRA + NFREEFEYHI Sbjct: 361 WLYRMVHRIENGQGRAEDLDMLNSIADNIQGRTICALGDAAAMPVRAMILNFREEFEYHI 420 Query: 421 EHKHCLVPAYI 431 EHKHCLVPAY+ Sbjct: 421 EHKHCLVPAYV 431 >gi|134096580|ref|YP_001101655.1| NAD dependent formate dehydrogenase subunit beta: fdsB [Herminiimonas arsenicoxydans] Length = 525 Score = 283 bits (723), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 154/394 (39%), Positives = 220/394 (55%), Gaps = 4/394 (1%) Query: 24 LEDYVKRGGYESLKRILNEKITPEQVIADLKASGLRGRGGAGFPTGLKWSFMPRQFPGQK 83 L+DY+ GY LK+ + + P ++ ++ SGLRGRGGA FPTG+KW + QK Sbjct: 126 LDDYLAHEGYVGLKKAI--AMEPAAIVQEVTDSGLRGRGGAAFPTGIKWKTVLGAEADQK 183 Query: 84 YLVCNTDEGEPGTFKDRDIIRYNPHSLIEGMIIGGYAMGITVGYNYIHGEIFAEYLRFEE 143 Y+ CN DEG+ GTF DR ++ +P LIEGM I G A+ T GY Y+ E E Sbjct: 184 YIACNADEGDSGTFSDRMVMEDDPFMLIEGMTIAGLAVNATEGYIYVRSEYPHSIANLNE 243 Query: 144 ALEEARAAGFLGDNILGTDFSFQLHAHHGYGAYICGEETALLESLEGKKGQPRFKPPFPA 203 A+ A AAG+LG NILG+ +F L GAY+CGEETA+LES+EGK+G R KPP PA Sbjct: 244 AIVAANAAGYLGKNILGSGRTFNLQVRKAAGAYVCGEETAMLESIEGKRGLVRAKPPLPA 303 Query: 204 SFGLYGKPTTINNTETFAAVPFIFKVGPQAYAEMGKPNNGGTKIFSVSGDVERPGNYEIP 263 GL+GKPT INN + +AVP I G Y + G + GT ++G+++ G E Sbjct: 304 LQGLFGKPTVINNVISLSAVPLILSRGATFYKDFGMGRSRGTLPMQLAGNLKYGGLVEKA 363 Query: 264 LGTPFSTLL-ELAGGMRGGKKIKAVIPGGSSAPVIRGEVMMDTTMDYDAIAKAGSMLGSG 322 G LL + GG G+ I+AV GG + E + DT DY+A A S +G G Sbjct: 364 FGVTLRELLYDFGGGSESGRPIRAVQVGGPLGAYMP-ESLFDTPFDYEAFAAVASTVGHG 422 Query: 323 AVTVMDETRCMVKSLLRLSYFYHEESCGQCTPCREGTGWMYRLVNRIENGHGKMEDLDVL 382 + D+T M K +F ESCG+CTPCR G+ ++++I + + + +L Sbjct: 423 GLVAFDDTVDMAKQARYAMHFCAVESCGKCTPCRIGSTRGVEVMDKIIANQNRPQQIHLL 482 Query: 383 NSVADNIQGRTICALGDAAAMPVRAFVKNFREEF 416 + D + ++CA+G+ PV + + +F E+F Sbjct: 483 RDLCDVMVTGSLCAMGNMTPFPVLSALNHFPEDF 516 >gi|134093635|ref|YP_001098710.1| NAD dependent formate dehydrogenase subunit beta Fdh1B [Herminiimonas arsenicoxydans] Length = 567 Score = 254 bits (650), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 146/392 (37%), Positives = 213/392 (54%), Gaps = 16/392 (4%) Query: 26 DYVKRGGYESLKRILNEKITPEQVIADLKASGLRGRGGAGFPTGLKWSFMPRQFPGQKYL 85 +Y K GGYE LK+ ++ + E V+ ++ SGLRG GGAGFP G KW + R G + + Sbjct: 190 EYSKVGGYELLKKCISGERDVESVLKTMEDSGLRGLGGAGFPAGRKWRIV-RGEKGPRLM 248 Query: 86 VCNTDEGEPGTFKDRDIIRYNPHSLIEGMIIGGYAMGITVGYNYIHGEIFAEYLRFEEAL 145 N DEGEPGTFKDR + +PH +EGM+I +A+ I Y Y+ E + E L Sbjct: 249 AVNIDEGEPGTFKDRVYLEKDPHRFLEGMLIAAWAVDIQTIYIYLRDEYHGCRVMLEAEL 308 Query: 146 EEARAAGFLGDNILGTDFSFQLHAHHGYGAYICGEETALLESLEGKKGQPRFKPPFPASF 205 + +A + + ++ G GAYICGEE+A++ES+EGK+G PR +PP+ A Sbjct: 309 AKLKANPPIAN-------MPEIFLRRGAGAYICGEESAMIESIEGKRGMPRLRPPYVAQV 361 Query: 206 GLYGKPTTINNTETFAAVPFIFKVGPQAYAEMGKPNNGGTKIFSVSGDVERPGNYEIPLG 265 GL+G+PT +N ET V I + G + + G+ G + +SVSG V+ PG P G Sbjct: 362 GLFGRPTLEHNFETLYWVRDILEKGGEWFTSHGRNGRKGLRSYSVSGRVKNPGVKLAPAG 421 Query: 266 TPFSTLL-ELAGGMRGGKKIKAVIPGGSSAPVIRGEVMMDTTMDYDAIAKAGSMLGSGAV 324 L+ E GGM G+ +PGG+S ++ M D +D+D + G +GS AV Sbjct: 422 ITIQELIDEHCGGMLDGQTFYGYLPGGASGGILPAS-MNDIPLDFDTLQPYGCFIGSAAV 480 Query: 325 TVMDETRCMVKSLLRLSYFYHEESCGQCTPCREGTGWMYRLVNRIENGHGKMEDLDVLNS 384 VM + V++ + F+ ESCGQCTPCR GT L+ + + G +EDL ++ Sbjct: 481 IVMSDKDTAVQAARNMMDFFKHESCGQCTPCRVGTAKAAELIKKPKWDVGLLEDLSLV-- 538 Query: 385 VADNIQGRTICALGDAAAMPVRAFVKNFREEF 416 ++ +IC LG AA P+ VK F E Sbjct: 539 ----MRDSSICGLGQAAPNPIDCVVKYFPHEL 566 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.140 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 891,830 Number of extensions: 39199 Number of successful extensions: 97 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 91 Number of HSP's successfully gapped: 3 Length of query: 431 Length of database: 1,000,347 Length adjustment: 84 Effective length of query: 347 Effective length of database: 723,567 Effective search space: 251077749 Effective search space used: 251077749 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)