BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1629.p
         (417 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095028|ref|YP_001100103.1| NADH dehydrogenase subunit D [H...   812   0.0  

>gi|134095028|ref|YP_001100103.1| NADH dehydrogenase subunit D
           [Herminiimonas arsenicoxydans]
          Length = 417

 Score =  812 bits (2097), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/417 (91%), Positives = 399/417 (95%)

Query: 1   MAEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEQKTFLQSV 60
           MAEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEQKT+LQSV
Sbjct: 1   MAEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEQKTYLQSV 60

Query: 61  PYMDRLDYVSMMCNEHGYVMAIERLLGIEVPLRAQYIRVMFDEITRLLNHLMWIGAHALD 120
           PYMDRLDYVSMMCNEH YVM+IE++L +EVPLRAQYIRVMFDEITR+LNHLMW+GAHALD
Sbjct: 61  PYMDRLDYVSMMCNEHAYVMSIEKMLNLEVPLRAQYIRVMFDEITRILNHLMWLGAHALD 120

Query: 121 VGAMGVLLYAFREREDLFDCYEAVSGARMHAAYYRPGGVYRDLPDTMPQYKASIVRNEKA 180
           VGAMGV LYAFREREDL DCYEAVSGARMHAAYYRPGGVYRDLPD MPQ+KASI+RN KA
Sbjct: 121 VGAMGVFLYAFREREDLMDCYEAVSGARMHAAYYRPGGVYRDLPDAMPQHKASIIRNAKA 180

Query: 181 IRELNENRQGSLLDFIEDFTNRFPTYVDEYETLLTDNRIWKQRLVGVGVVSPERALQMGF 240
           I +LNENRQGSLLDFIEDFTNRFPTYVDEYETLLTDNRIWKQRLVGVGVVSPERA+ MGF
Sbjct: 181 INKLNENRQGSLLDFIEDFTNRFPTYVDEYETLLTDNRIWKQRLVGVGVVSPERAMAMGF 240

Query: 241 TGPMLRGSGIAWDLRKKQPYEVYDLLDFDIPIGKNGDCYDRYLVRVAEMRQSNRIIKQCV 300
           TGPMLRGSGI WDLRKKQPYEVYDLLDFDIP+G NGDCYDRYLVRV EMRQSNRIIKQCV
Sbjct: 241 TGPMLRGSGIEWDLRKKQPYEVYDLLDFDIPVGTNGDCYDRYLVRVEEMRQSNRIIKQCV 300

Query: 301 EWLRNNPGPVITDNHKIAPPKRADMKSNMEDLIHHFKLFTEGFRVPAGEAYAAVEHPKGE 360
           EWLRNNPG V+TDNHK+APP R DMKSNMEDLIHHFKLFTEGF VP GEAYAAVEHPKGE
Sbjct: 301 EWLRNNPGSVMTDNHKVAPPSRVDMKSNMEDLIHHFKLFTEGFHVPVGEAYAAVEHPKGE 360

Query: 361 FGIYLVSDGANKPYRLKIRAPGFAHLQALNEMAKGHMIADAVTIIGTQDIVFGEIDR 417
           FG+YL+SDGANKPYR+KIRAPGF HLQ L+EMAKGHMIADAVTIIGTQDIVFGEIDR
Sbjct: 361 FGVYLISDGANKPYRMKIRAPGFPHLQGLDEMAKGHMIADAVTIIGTQDIVFGEIDR 417


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.141    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 863,643
Number of extensions: 37598
Number of successful extensions: 93
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 333
Effective length of database: 723,567
Effective search space: 240947811
Effective search space used: 240947811
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)