BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1627.p
         (158 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095030|ref|YP_001100105.1| NADH dehydrogenase subunit B [H...   314   2e-87

>gi|134095030|ref|YP_001100105.1| NADH dehydrogenase subunit B
           [Herminiimonas arsenicoxydans]
          Length = 158

 Score =  314 bits (804), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 145/158 (91%), Positives = 154/158 (97%)

Query: 1   MSIEGVLNEGFVTTSLDKVINWTRTGSLWPMTFGLACCAVEMMHVGASRYDLDRFGAVFR 60
           M+IEGVLNEGFVTT+ DK+INWTRTGS+WPMTFGLACCAVEMMH GASRYD+DRFG VFR
Sbjct: 1   MAIEGVLNEGFVTTTADKLINWTRTGSMWPMTFGLACCAVEMMHAGASRYDMDRFGVVFR 60

Query: 61  PSPRQSDLMIVAGTLCNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCD 120
           PSPRQSD+MIVAGTLCNKMAPALRKVYDQM EPRWVISMGSCANGGGYYHYSYSVVRGCD
Sbjct: 61  PSPRQSDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCD 120

Query: 121 RIVPVDVYVPGCPPTAEALLYGVIQLQNKIKRTNTIAR 158
           RIVPVDVYVPGCPPTAEALLYG++QLQNKI+RTNTIAR
Sbjct: 121 RIVPVDVYVPGCPPTAEALLYGIMQLQNKIRRTNTIAR 158


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.324    0.138    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 271,788
Number of extensions: 9082
Number of successful extensions: 17
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 158
Length of database: 1,000,347
Length adjustment: 75
Effective length of query: 83
Effective length of database: 753,222
Effective search space: 62517426
Effective search space used: 62517426
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 125 (52.8 bits)