BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1624.p
         (248 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095033|ref|YP_001100108.1| triosephosphate isomerase [Herm...   358   e-100

>gi|134095033|ref|YP_001100108.1| triosephosphate isomerase
           [Herminiimonas arsenicoxydans]
          Length = 248

 Score =  358 bits (920), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 183/248 (73%), Positives = 209/248 (84%)

Query: 1   MRRKLVAGNWKMNGSLAANAALVAGIKEGLPAEVCDVAVCVPAPYLAQVQGAVAGSPVAL 60
           MRRKLVAGNWKMNGSLAANA L+A IK       CDVAVCVPAPYLAQ    ++ S +AL
Sbjct: 1   MRRKLVAGNWKMNGSLAANALLLAEIKAEFGNPACDVAVCVPAPYLAQCLSLLSDSTIAL 60

Query: 61  GAQDMSAHAAGAYTGEVSAAMLQEFGVHYVILGHSERRAYHGESDAAVAAKTVTALKAGL 120
           GAQD+S+H +GAYTGEVS AML EF   YVI+GHSERRAY GE++  VA KTV AL AGL
Sbjct: 61  GAQDVSSHDSGAYTGEVSTAMLLEFACRYVIVGHSERRAYFGETNELVAQKTVRALSAGL 120

Query: 121 VPVVCVGETLEQREAGQTNEIVGGQLDVVLTALSNEDAARIVVAYEPVWAIGTGKTATPE 180
           +P+VCVGETLEQREAGQT+E+VG Q+D VL++++  D A+IVVAYEPVWAIGTGKTATPE
Sbjct: 121 MPIVCVGETLEQREAGQTDEVVGRQIDAVLSSIAENDLAKIVVAYEPVWAIGTGKTATPE 180

Query: 181 MAQEVHAMLRARLGAKSAEAAAKVRILYGGSMKPDNAQQLLVMADIDGGLIGGAALKAED 240
           MAQEVH MLR RL AK+A+AA +VRILYGGSMKPDNA++LL M DIDGGLIGGAALKA D
Sbjct: 181 MAQEVHVMLRRRLHAKNAQAATEVRILYGGSMKPDNAKELLAMPDIDGGLIGGAALKAAD 240

Query: 241 FLAIIKAA 248
           FLAII+AA
Sbjct: 241 FLAIIRAA 248


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.316    0.130    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 415,161
Number of extensions: 15574
Number of successful extensions: 77
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 169
Effective length of database: 740,042
Effective search space: 125067098
Effective search space used: 125067098
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 127 (53.5 bits)