BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1614.p
         (711 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095034|ref|YP_001100109.1| polynucleotide phosphorylase/po...  1278   0.0  

>gi|134095034|ref|YP_001100109.1| polynucleotide
           phosphorylase/polyadenylase [Herminiimonas
           arsenicoxydans]
          Length = 710

 Score = 1278 bits (3308), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 629/710 (88%), Positives = 670/710 (94%), Gaps = 1/710 (0%)

Query: 1   VFNKVSKTFQYGQHQVTLETGEIARQASGAVVVSVEDTVILATVVARKEAKPGQDFFPLT 60
           +FNKV+KTFQYGQH VTLETGEIARQASGAV+VS+EDTV+LATVVARK+AKPGQDFFPLT
Sbjct: 1   MFNKVTKTFQYGQHTVTLETGEIARQASGAVLVSIEDTVVLATVVARKDAKPGQDFFPLT 60

Query: 61  VDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPIRPLFPEGYLNEVQVIIHVLSV 120
           VDY+EKTYAAGRIPGGFFKREG+PSEKETLTSRLIDRPIRPLFPEGYLNEVQ+IIHV+SV
Sbjct: 61  VDYVEKTYAAGRIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGYLNEVQIIIHVMSV 120

Query: 121 NPEIDPDIPAMIGASAALSLAGIPFNGPVGAARVGYIDGQYVLNPTTSQLKSSQLDLVVA 180
           NPEIDPDI AMIGASAALS++GIPF GP+GAARVGYIDGQY+LNPT +QLK+SQ+DLVVA
Sbjct: 121 NPEIDPDIAAMIGASAALSVSGIPFAGPLGAARVGYIDGQYILNPTATQLKTSQMDLVVA 180

Query: 181 GTETAVLMVESEADQLSEDVMLGAVVFGHEQSKAVIDAIHALVRDGGKPEVQWTAPAKNE 240
           GTE AVLMVESEA QLSE+VMLGAVVFGH+Q KAVIDAIH LVRDGGKPEVQW  PAKNE
Sbjct: 181 GTEAAVLMVESEAQQLSEEVMLGAVVFGHDQMKAVIDAIHDLVRDGGKPEVQWAPPAKNE 240

Query: 241 ALIARVAQLAEGPLREAYQTKDKQARTEKLKAVSAQVNEALVAEAAANNGVAADAAEVGS 300
           ALIARVA  AE  LR AYQTKDKQART KLK   A+VN  + AEA +  G A D +EVG+
Sbjct: 241 ALIARVAHFAEEKLRAAYQTKDKQARTAKLKDAFAEVNAEVAAEATSVGGAAPDTSEVGN 300

Query: 301 ILFDLEAKIVRSQILEGEPRIDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQALVIAT 360
           ILFDLEAKIVRSQIL+GEPRIDGRDTRTVRPI+IRTGVLPRTHGSALFTRGETQALVIAT
Sbjct: 301 ILFDLEAKIVRSQILDGEPRIDGRDTRTVRPITIRTGVLPRTHGSALFTRGETQALVIAT 360

Query: 361 LGTARDEQKIDGLLGEYSDRFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALIAAL 420
           LGTARDEQKID L+GEYSDRFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALIAAL
Sbjct: 361 LGTARDEQKIDALMGEYSDRFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALIAAL 420

Query: 421 PAADEFSYSVRLVSEITESNGSSSMASVCGGCLALMDAGVPMKSHVAGIAMGLIKEGNKF 480
           PA ++FSYSVRLVSEITESNGSSSMASVCGGCLALMDAGVPM++HVAGIAMGLIK+G KF
Sbjct: 421 PAPEDFSYSVRLVSEITESNGSSSMASVCGGCLALMDAGVPMQAHVAGIAMGLIKDGGKF 480

Query: 481 AVLTDILGDEDHLGDMDFKVAGTANGITALQMDIKIQGITKEIMQVALEQAKEGRHHILG 540
           AVL+DILGDEDHLGDMDFKVAGTANGITALQMDIKIQGITKEIMQVAL QAKEGR HILG
Sbjct: 481 AVLSDILGDEDHLGDMDFKVAGTANGITALQMDIKIQGITKEIMQVALAQAKEGRIHILG 540

Query: 541 KMQEAVPAG-RAELSDFAPRLITIKINPEKIRDVIGKGGAVIRALTEETGTQIDISDEGV 599
           +M++AVP+G   ELSDFAPRLITIKINPEKIRDVIGKGGAVIRALTEETGTQIDISDEGV
Sbjct: 541 EMEKAVPSGTTGELSDFAPRLITIKINPEKIRDVIGKGGAVIRALTEETGTQIDISDEGV 600

Query: 600 VTIASVDASAGQEAKRRIEELTASVEVGKIYEGTVLKLLDFGAIVQVLPGKDGLLHISQI 659
           VTIASVDA+AGQEAKRRIEELTASVEVGK+YEGTVLKLLDFGAIVQV+PGKDGLLHISQI
Sbjct: 601 VTIASVDAAAGQEAKRRIEELTASVEVGKVYEGTVLKLLDFGAIVQVMPGKDGLLHISQI 660

Query: 660 ANERVNAVADYLKEGQQVRVKVLETDDRGRLKLSMKAAQAEEGDAAAPQE 709
           ANERVNAVADYLKEGQQVRVKVLETDDRGRLKLSMKAA AE+   AAPQE
Sbjct: 661 ANERVNAVADYLKEGQQVRVKVLETDDRGRLKLSMKAALAEDNPEAAPQE 710


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.315    0.133    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,212,217
Number of extensions: 49916
Number of successful extensions: 174
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 2
Length of query: 711
Length of database: 1,000,347
Length adjustment: 88
Effective length of query: 623
Effective length of database: 710,387
Effective search space: 442571101
Effective search space used: 442571101
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 132 (55.5 bits)