BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1613.p
         (89 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095035|ref|YP_001100110.1| 30S ribosomal protein S15 [Herm...   158   6e-41

>gi|134095035|ref|YP_001100110.1| 30S ribosomal protein S15
          [Herminiimonas arsenicoxydans]
          Length = 89

 Score =  158 bits (399), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 77/89 (86%), Positives = 82/89 (92%)

Query: 1  MSIEKAAKAAIISENARGTNDTGSPEVQVALLTARINDLNGHFKAHVKDHHSRRGLIKMV 60
          MS+EK +KAAI+++NARG NDTGSPEVQVALLTARINDLNGHFKAH KDHHSRRGLI MV
Sbjct: 1  MSLEKTSKAAIVADNARGANDTGSPEVQVALLTARINDLNGHFKAHSKDHHSRRGLIMMV 60

Query: 61 NRRKSLLSYLKNKDADRYRALIEKLGLRK 89
          NRRKSLLSYLKNKDA RYR LI KLGLRK
Sbjct: 61 NRRKSLLSYLKNKDATRYRDLIAKLGLRK 89


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.131    0.355 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 137,969
Number of extensions: 4291
Number of successful extensions: 9
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 89
Length of database: 1,000,347
Length adjustment: 58
Effective length of query: 31
Effective length of database: 809,237
Effective search space: 25086347
Effective search space used: 25086347
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 121 (51.2 bits)