BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1608.p
         (294 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094314|ref|YP_001099389.1| RpiR family transcriptional reg...   107   5e-25

>gi|134094314|ref|YP_001099389.1| RpiR family transcriptional
           regulator [Herminiimonas arsenicoxydans]
          Length = 283

 Score =  107 bits (268), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 88/275 (32%), Positives = 144/275 (52%), Gaps = 18/275 (6%)

Query: 7   IISRITERSSTLRFAEQKVAQAILGDLSAAASASIGELAAKAGVSVASVTRFAKAMGCRD 66
           ++  I  +  +L  +E+KVA A+L     A + +I  LA KA VS  +V RF +A+G   
Sbjct: 2   LLDSIRTQYDSLSKSEKKVALAVLEQPELAIAENITALAKKADVSEPTVVRFCRAIGFDG 61

Query: 67  VREFKFLLAQAVAVGQRFFDGAKTLPSEQPPELA-----DVVYRDIHAVLELNRAMLNPE 121
              FK  LAQ +A+      GA   P+  P +LA      +  R I+ +L+L R  L+  
Sbjct: 62  WHAFKMKLAQGLALAP----GADESPA--PEDLATDLVSKICSRSINTLLDL-RNSLDAN 114

Query: 122 MLMQAAHLLLGARMIYCFGMGGGSTMISDEARYRLVRLGRPVATYHDALLQKMVAATLDR 181
            + QA  +L  A  I  +G G  S +I+ +A+++  R G P   Y D  +  + A+ L +
Sbjct: 115 AIEQALQVLARANRIEFYGQGT-SGIIAADAQHKFFRSGIPTVAYADPHIHSIAASLLKK 173

Query: 182 DDVLLVFSTTGSVPELLASCEVAREYGVKLIAITALGSPLAKMADVLLPIK-ALETDLIF 240
            D ++  S  G+   LL S ++AR  G  ++ +   G+PLA++A VL+PI     TD  +
Sbjct: 174 GDAVVAISQRGNSIALLRSVQLARSCGADVVILAPSGTPLAELATVLIPIDLHFHTD-PY 232

Query: 241 KPSSSRYAMMATLDMLVLELALLHKQSSQERLRRL 275
            P S+R A +  +D+L + LAL   + S ER +++
Sbjct: 233 TPISARLAHLVVIDILAVGLAL---RLSPERRKKM 264


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.135    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 490,121
Number of extensions: 18511
Number of successful extensions: 57
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 213
Effective length of database: 733,452
Effective search space: 156225276
Effective search space used: 156225276
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 128 (53.9 bits)