BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1602.p (499 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093880|ref|YP_001098955.1| putative signal peptide [Hermin... 96 5e-21 gi|134096240|ref|YP_001101315.1| hypothetical protein HEAR3085 [... 87 1e-18 gi|134095840|ref|YP_001100915.1| hypothetical protein HEAR2672 [... 85 1e-17 gi|134094556|ref|YP_001099631.1| hypothetical protein HEAR1331 [... 83 2e-17 gi|134094022|ref|YP_001099097.1| hypothetical protein HEAR0777 [... 83 3e-17 >gi|134093880|ref|YP_001098955.1| putative signal peptide [Herminiimonas arsenicoxydans] Length = 944 Score = 95.5 bits (236), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 70/195 (35%), Positives = 101/195 (51%), Gaps = 18/195 (9%) Query: 317 LVALTDITARKKAEAYLEFLGKHDELTKLHNRAYMVEELNRL----ERKGPFPVSVIVAD 372 +V DITA K+ E+ LEF D LT L NR+ M + L + R G P+ ++ D Sbjct: 489 IVVQYDITATKRYESELEFQTNRDALTGLANRSLMRDRLGQAVSYAHRYG-HPIWILFVD 547 Query: 373 LNGLKEINDELGHAAGDGLLRRVGEVLAKAVERPGSVARTGGDEFAILLPATDERGC--- 429 L+ K +ND LGH AGD LL+ V L AV +VAR GGDEF ++LP + G Sbjct: 548 LDRFKFVNDTLGHQAGDILLKAVSARLQAAVRDTDTVARMGGDEFVLILPERTDAGLSTG 607 Query: 430 --QVLMEQIEKLVEVNNQYYSGMPLSLSMGAAT-AAPGERLEQVVQRADSLMYEAK---- 482 Q +ME I + + + + +S S+G A A GE E++++ AD MY AK Sbjct: 608 IMQRIMESIAQPLTIEGHEFF---ISGSIGVAVYPADGETPEELIKHADIAMYRAKETGR 664 Query: 483 HHYYATAPGQDRRHL 497 +++ P + R L Sbjct: 665 NNFQFYTPAMNERAL 679 >gi|134096240|ref|YP_001101315.1| hypothetical protein HEAR3085 [Herminiimonas arsenicoxydans] Length = 540 Score = 87.4 bits (215), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 65/178 (36%), Positives = 96/178 (53%), Gaps = 13/178 (7%) Query: 314 DLVLVALTDITARKKAEAYLEFLGKHDELTKLHNRAYMVEELNR---LERKGPFPVSVIV 370 +L+LV DI+ R+K E L + HDELT L NRA + + L+ R+ SVI Sbjct: 87 ELLLVG-RDISHRQKTEERLRHMATHDELTNLPNRALLADRLSMGMAQARRTNIGFSVIA 145 Query: 371 ADLNGLKEINDELGHAAGDGLLRRVGEVLAKAVERPGSVARTGGDEFAILLP-ATDERGC 429 DL+G K++ND LGHA GD LLR L + + ++AR GGDEF +LP A DE Sbjct: 146 LDLDGFKKVNDALGHAVGDALLRIAAGRLRETLRDVDTLARVGGDEFVAVLPGAIDEAEI 205 Query: 430 Q----VLMEQIEKLVEVNNQYYSGMPLSLSMGAAT-AAPGERLEQVVQRADSLMYEAK 482 Q ++ ++ E+N+ + +S S+G A G+ +++ AD+ MY AK Sbjct: 206 QNVARRMISALQLPFEINDDT---LYVSASIGVAIYPIHGDSEVKLLAHADAAMYRAK 260 >gi|134095840|ref|YP_001100915.1| hypothetical protein HEAR2672 [Herminiimonas arsenicoxydans] Length = 708 Score = 84.7 bits (208), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 70/207 (33%), Positives = 103/207 (49%), Gaps = 15/207 (7%) Query: 286 EVVNYSLSGEALHVHLQFSVFPGHEDNWDLVLVALTDITARKKAEAYLEFLGKHDELTKL 345 EV G V L + P H + W L + L DIT R+ +A L + D LT L Sbjct: 497 EVSALRRDGLEFPVELAVASVPRH-NGW-LFIAFLHDITERQLLQATLTNMALKDALTDL 554 Query: 346 HNRAYMVEELN----RLERKGPFPVSVIVADLNGLKEINDELGHAAGDGLLRRVGEVLAK 401 NR ++++L R R G P++V+ DL+G K IND GH AGD LLR +G+ + Sbjct: 555 PNRRALMQKLPEAIVRAARLGK-PLAVLFIDLDGFKGINDGYGHEAGDELLRTMGQRIVG 613 Query: 402 AVERPGSVARTGGDEFAILLPATDERGCQVLMEQIEKLVEVNNQYY----SGMPLSLSMG 457 V +V R GDEF ++L + G +E +K+++ Q + + + LS S+G Sbjct: 614 VVRATDTVVRLAGDEFVVVLEMLN--GDADALEVADKILQAIQQPFVLSAATVTLSGSIG 671 Query: 458 AATAAPGE--RLEQVVQRADSLMYEAK 482 A P + EQ++ AD MY AK Sbjct: 672 IAMHWPQDLTHAEQLITLADGAMYAAK 698 >gi|134094556|ref|YP_001099631.1| hypothetical protein HEAR1331 [Herminiimonas arsenicoxydans] Length = 859 Score = 83.2 bits (204), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 58/169 (34%), Positives = 87/169 (51%), Gaps = 9/169 (5%) Query: 322 DITARKKAEAYLEFLGKHDELTKLHNRAYMVEELNR---LERKGPFPVSVIVADLNGLKE 378 DIT +K A+A +E L D LT L NRA + E R L + ++V+ DL+ K Sbjct: 417 DITNQKNAQARIESLAHFDVLTGLPNRALLDERAQRALRLAEEDQATLAVMFLDLDHFKN 476 Query: 379 INDELGHAAGDGLLRRVGEVLAKAVERPGSVARTGGDEFAILLPATDERGCQVLMEQIEK 438 IND LGH GD LL + + L + R +++R GGDEF +LLP + + + +++ + Sbjct: 477 INDTLGHNLGDTLLVELAQRLRAVLRRDDTLSRLGGDEFVLLLPGANRESAKKIAQELMR 536 Query: 439 LVEVNNQYYSG---MPLSLSMGAAT-AAPGERLEQVVQRADSLMYEAKH 483 +N Y G + + S+G A A G E + + AD MY AK Sbjct: 537 --AINEPYRIGSHELNVMASIGIAVYPADGMDFETLCKNADVAMYRAKQ 583 >gi|134094022|ref|YP_001099097.1| hypothetical protein HEAR0777 [Herminiimonas arsenicoxydans] Length = 568 Score = 83.2 bits (204), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 54/155 (34%), Positives = 79/155 (50%), Gaps = 7/155 (4%) Query: 333 LEFLGKHDELTKLHNRAY----MVEELNRLERKGPFPVSVIVADLNGLKEINDELGHAAG 388 LE L + D LT L NR + + EE R +R P +++ D++ K +ND GH G Sbjct: 398 LEQLARTDALTGLANRMHTNERLAEEFARFKR-SKIPYCILMLDVDFFKRVNDIYGHGVG 456 Query: 389 DGLLRRVGEVLAKAVERPGSVARTGGDEFAILLPATDERGCQVLMEQIEKLVEVNNQYYS 448 D +L+ V +L+ V + V R GG+EF +LP TD V+ E+I +E Sbjct: 457 DEVLKHVASILSATVRKTDFVGRHGGEEFLSILPMTDSSAAMVVAEKIRNTIESTPIGPV 516 Query: 449 GMPLSLSMGAATAAPGERLEQV-VQRADSLMYEAK 482 G L++S+G + E V V RAD MY+AK Sbjct: 517 G-NLTVSIGVQEVTVNDINEDVAVTRADECMYQAK 550 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.135 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 947,336 Number of extensions: 38522 Number of successful extensions: 164 Number of sequences better than 1.0e-08: 29 Number of HSP's gapped: 141 Number of HSP's successfully gapped: 29 Length of query: 499 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 413 Effective length of database: 716,977 Effective search space: 296111501 Effective search space used: 296111501 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)