BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1600.p
         (286 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094469|ref|YP_001099544.1| CDP-diacylglycerol-serine O-pho...   418   e-118
gi|134096099|ref|YP_001101174.1| CDP-diacylglycerol--serine O-ph...    66   2e-12

>gi|134094469|ref|YP_001099544.1| CDP-diacylglycerol-serine
           O-phosphatidyltransferase [Herminiimonas arsenicoxydans]
          Length = 338

 Score =  418 bits (1075), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 210/292 (71%), Positives = 238/292 (81%), Gaps = 11/292 (3%)

Query: 1   MPTFRRRKAK------PGI-PFPKSLRKPKAAQLDDAGQVVT---RRRSRGIYLLPNAFT 50
           MP+F RRKAK      P + P  K  R P+     +  + VT   + R RGIYLLPNAFT
Sbjct: 47  MPSFNRRKAKNSNSTFPRVRPLGKLARGPQVLLQGEESESVTPAPKGRRRGIYLLPNAFT 106

Query: 51  TAALFCGFYAIVMAMNLKFDYASIAIFVAMVLDSLDGRVARMTNTQSEFGAQYDSLSDMV 110
           TA LFCGFYAIVMAM  KFDYA+IAIF AM+LD++DGRVAR+TNTQSEFGAQYDSL+DMV
Sbjct: 107 TAGLFCGFYAIVMAMGQKFDYAAIAIFAAMLLDAIDGRVARLTNTQSEFGAQYDSLADMV 166

Query: 111 SFGAAPALVVYEWSLRGMGKLGWLAAFVYCAGGALRLARFNTNIAVVDKRYFQGLPSPAA 170
           SFGAAP LV Y W+L+ +GKLGWLAAFVYCAGGALRLARFNTNI VVDKRYFQGLPSPAA
Sbjct: 167 SFGAAPGLVAYIWALQDLGKLGWLAAFVYCAGGALRLARFNTNIGVVDKRYFQGLPSPAA 226

Query: 171 AALVAGFVWLMDDLRFAGTDLSWYGWVITLYAGITMVTNVPFYSFKDVNFRKPVPFIAAL 230
           AALVAGF+WLM DL +AG +LSW  W ITLYAG+TMVTNVPFYSFKD+N+RK VPFIA  
Sbjct: 227 AALVAGFIWLMQDLGYAGNELSWAAWTITLYAGLTMVTNVPFYSFKDINYRKSVPFIAIF 286

Query: 231 LVVVALVLISSDPSKVLFGLFVLYGLSGYAVYIWRRIKGKPVSIVQTE-DEH 281
           ++V+A V I+ DP KVLFGLFVLYGLSGY +Y WR  KG+PVSI+QTE DEH
Sbjct: 287 VIVLAFVAIAGDPPKVLFGLFVLYGLSGYVIYFWRLAKGRPVSIIQTEHDEH 338


>gi|134096099|ref|YP_001101174.1| CDP-diacylglycerol--serine
           O-phosphatidyltransferase [Herminiimonas arsenicoxydans]
          Length = 210

 Score = 66.2 bits (160), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 71/159 (44%), Gaps = 17/159 (10%)

Query: 40  RGIYLLPNAFTTAALFCGFYAIVMAMNLKFDYASIAIF--------VAMVLDSLDGRVAR 91
           RG +L  + FT     CG  A+  AM L  +  S+  F         A + D LDG++AR
Sbjct: 15  RGFHL-ADFFTLGNAACGVAAVFFAM-LYMNSQSLTHFYAAAAMAPAAFIFDVLDGKIAR 72

Query: 92  MTNTQSEFGAQYDSLSDMVSFGAAPALVVYEWSLRGMGKLGWLAAFVYCAGGALRLARFN 151
                S  G + DSL+D++SFG AP  + +   L   G   W+A   +   G  RLAR+N
Sbjct: 73  WRRQHSAMGRELDSLADVISFGLAPVTLGFAAGLT--GGWDWVAMIYFVCCGVSRLARYN 130

Query: 152 TNIAVVDK-----RYFQGLPSPAAAALVAGFVWLMDDLR 185
                + +      YF+G P P +  +     WL    R
Sbjct: 131 VTAETLSEGADKVAYFEGTPIPTSVLITGILAWLASQGR 169


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.327    0.140    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 549,554
Number of extensions: 21445
Number of successful extensions: 77
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 2
Length of query: 286
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 205
Effective length of database: 733,452
Effective search space: 150357660
Effective search space used: 150357660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 128 (53.9 bits)