BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1597.p
         (270 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094468|ref|YP_001099543.1| hypothetical protein HEAR1240 [...   278   2e-76

>gi|134094468|ref|YP_001099543.1| hypothetical protein HEAR1240
           [Herminiimonas arsenicoxydans]
          Length = 252

 Score =  278 bits (711), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 148/261 (56%), Positives = 185/261 (70%), Gaps = 16/261 (6%)

Query: 11  ALLATACVAAQAQTPAQQAPLPAPTSVPTTGTLVVIPANGEITVPNDQAHVTLQVEEQDK 70
           ++LA ACVA  A   AQ       T + T+G L+++PA GE+   ND+A +TL +EEQDK
Sbjct: 7   SILALACVAISATAFAQ-------TPIQTSGALLIVPAFGEVKQANDEARLTLMIEEQDK 59

Query: 71  DKAAAASRVNQKMKQGIELLKRQDPQAELKSYGYYTYAVYGE-PPQVSGSPARVPPKARP 129
           DKAAAASRVNQKMKQG+E+ +++DP A L + GYYTYAVY E PP+ + + A    K R 
Sbjct: 60  DKAAAASRVNQKMKQGMEIARKEDPSAVLSTRGYYTYAVYQEEPPRPTNTQAN---KVRQ 116

Query: 130 VVAWRVGQYLEMNTQNLAALPRTVSAVQSVMNLTGLQFGLSPTAAKKLDAALVNATYRNL 189
           +  WRVGQYLE+ T NLA+LP+TV+A QSV+ + GLQFGLS T AKKLDA  +NATY+NL
Sbjct: 117 ISGWRVGQYLEVKTNNLASLPKTVAAAQSVLAMNGLQFGLSDTTAKKLDAQRINATYKNL 176

Query: 190 EERIGFIASAMHRNATDAVIDTVDFEGSGNYVPSAVAAAPMAKSAMMRSDMVQENASVAE 249
            ERI  IA AM RN  DAV+DT+DFEGSGNY     +AAP    A   S    +   V E
Sbjct: 177 TERIAAIARAMGRNPADAVLDTIDFEGSGNYAQE--SAAPKMMRAAAMSADAAQ---VEE 231

Query: 250 PSFEPGESTVTMRLVGKVRFR 270
           PSFEPGE+T+TM++VGKVRFR
Sbjct: 232 PSFEPGETTLTMQVVGKVRFR 252


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.313    0.126    0.350 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 367,680
Number of extensions: 11073
Number of successful extensions: 44
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 190
Effective length of database: 736,747
Effective search space: 139981930
Effective search space used: 139981930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 128 (53.9 bits)