BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1595.p
         (163 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094466|ref|YP_001099541.1| acetolactate synthase 3 regulat...   298   9e-83

>gi|134094466|ref|YP_001099541.1| acetolactate synthase 3 regulatory
           subunit [Herminiimonas arsenicoxydans]
          Length = 163

 Score =  298 bits (763), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 151/163 (92%), Positives = 160/163 (98%)

Query: 1   MRHIISVLLENEAGALSRVVGLFSARGYNIETLTVAPTEDSTLSRMTIVTSGSDDVIEQI 60
           MRHIISVLLENEAGALSRVVGLFSARGYNIETLTVAPTED+TLSRMTIVTSGSD+VIEQI
Sbjct: 1   MRHIISVLLENEAGALSRVVGLFSARGYNIETLTVAPTEDATLSRMTIVTSGSDEVIEQI 60

Query: 61  TKHLNRLIEVVKVVDLTEGAHIERELMLIKVRAVGKEREEMKRTADIFRGRIIDVTEKTY 120
           TKHLNRLIEVVKVVDLTEGA IERELMLIK+RAVGKEREEMKRTADIFRGRIIDVT+KTY
Sbjct: 61  TKHLNRLIEVVKVVDLTEGAFIERELMLIKIRAVGKEREEMKRTADIFRGRIIDVTDKTY 120

Query: 121 TIELTGAKSKLDAFIDALDRTAILETVRTGGSGIGRGERILKI 163
           TIELTG K+KLDAFI+++DRTAILETVRTG SGIGRGERILK+
Sbjct: 121 TIELTGNKTKLDAFIESIDRTAILETVRTGSSGIGRGERILKV 163


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.136    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 269,266
Number of extensions: 9702
Number of successful extensions: 28
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 1
Length of query: 163
Length of database: 1,000,347
Length adjustment: 75
Effective length of query: 88
Effective length of database: 753,222
Effective search space: 66283536
Effective search space used: 66283536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)