BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1594.p (572 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094465|ref|YP_001099540.1| acetolactate synthase III large... 1069 0.0 gi|134093610|ref|YP_001098685.1| glyoxylate carboligase [Hermini... 300 1e-82 gi|134093631|ref|YP_001098706.1| putative oxalyl-CoA decarboxyla... 150 1e-37 >gi|134094465|ref|YP_001099540.1| acetolactate synthase III large subunit [Herminiimonas arsenicoxydans] Length = 579 Score = 1069 bits (2764), Expect = 0.0, Method: Compositional matrix adjust. Identities = 498/569 (87%), Positives = 537/569 (94%) Query: 4 EHLSGADILVRCLAEEGVEHVFGYPGGAVLYIYDAIFKQDKFQHILVRHEQAAVHAADAY 63 E L+GA+I+VRCLAEEGVEHVFGYPGGAVLYIYDAI+ QDKFQHILVRHEQAAVHAADAY Sbjct: 11 EELTGAEIVVRCLAEEGVEHVFGYPGGAVLYIYDAIYNQDKFQHILVRHEQAAVHAADAY 70 Query: 64 SRSSQKVGVAIVTSGPGVTNAVTGLATAYMDSIPMVVISGQVPSTAIGQDAFQECDTVGI 123 SRSS+KVGV+IVTSGPGVTNAVTGLATAYMDSIPMV+ISGQVP+ IG DAFQECDTVGI Sbjct: 71 SRSSKKVGVSIVTSGPGVTNAVTGLATAYMDSIPMVIISGQVPTHGIGLDAFQECDTVGI 130 Query: 124 TRPCVKHNFLVKDVKDLAETVKKAFFIATTGRPGPVLVDIPKDITMHTCAYEYPKAVEMR 183 TRPCVKHNFLVKDV+DLA T+KKAF+IATTGRPGPVLVDIPKD++MH C + YPK VEMR Sbjct: 131 TRPCVKHNFLVKDVRDLAATMKKAFYIATTGRPGPVLVDIPKDVSMHKCMFSYPKEVEMR 190 Query: 184 SYKPVDKGHSGQIRKALQLLLTAERPMIYTGGGIILANAAPELNKLVDRLGYPCTNTLMG 243 SYKPVDKGH+GQIRKA+QLLL AERPMIYTGGG+ILANA+ EL +LVD+LG+PCTNTLMG Sbjct: 191 SYKPVDKGHTGQIRKAVQLLLQAERPMIYTGGGVILANASEELTQLVDKLGFPCTNTLMG 250 Query: 244 LGAYRSSSDKFVGMPGMHGTFEANMAMQHCDVLIAIGARFDDRVIGNPKHFASHARKIIH 303 LG+YR+SSDKFVGMPGMHGT+EANMAMQH DV+IAIGARFDDRVIGNPKHF+S+ RKIIH Sbjct: 251 LGSYRASSDKFVGMPGMHGTYEANMAMQHSDVMIAIGARFDDRVIGNPKHFSSNPRKIIH 310 Query: 304 IDIDPSSISKRVKVDIPIVGNVKDVLQELLAQLDSAETRQNGAALDAWWKQINEWRKRDC 363 IDIDPSSISKRVKVDIPIVGNVK+VL ELLAQLD+AE + N AL WWKQINEWRKRDC Sbjct: 311 IDIDPSSISKRVKVDIPIVGNVKEVLVELLAQLDAAEAKPNSVALSNWWKQINEWRKRDC 370 Query: 364 LKFATSDEFIKPQSVVQKVWEVTKGDAFITSDVGQHQMWAAQYYGFDKPRRWINSGGLGT 423 LKF S IKPQSV+QKVW+VTKGDAF+TSDVGQHQMWAAQYY FDKPRRWINSGGLGT Sbjct: 371 LKFENSTTVIKPQSVIQKVWDVTKGDAFVTSDVGQHQMWAAQYYPFDKPRRWINSGGLGT 430 Query: 424 MGVGLPYAMGVQMANPDATVACITGEASIQMCIQELATCKQYHLTPKIILLNNRFLGMVR 483 MGVGLPYAMGVQMANPDATVACITGEASIQMCIQELATCKQYHLTPKIILLNNRFLGMVR Sbjct: 431 MGVGLPYAMGVQMANPDATVACITGEASIQMCIQELATCKQYHLTPKIILLNNRFLGMVR 490 Query: 484 QWQQIDYGSRYSESYMDSLPDFNKLAESYGHVGMKIEKPGDVDGALREAFAMKDRLVFMN 543 QWQQ++YGSRYSESYMDSLPDF+KL E+YGHVGM IE P DVDGAL+EAFAMKDRLVFMN Sbjct: 491 QWQQLEYGSRYSESYMDSLPDFDKLVEAYGHVGMTIENPADVDGALKEAFAMKDRLVFMN 550 Query: 544 FITDQTENVWPMVKAGKGLTEMLLGSEDL 572 FITDQTENVWPMVKAG+GLTEMLLGSEDL Sbjct: 551 FITDQTENVWPMVKAGQGLTEMLLGSEDL 579 >gi|134093610|ref|YP_001098685.1| glyoxylate carboligase [Herminiimonas arsenicoxydans] Length = 582 Score = 300 bits (769), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 181/542 (33%), Positives = 292/542 (53%), Gaps = 22/542 (4%) Query: 6 LSGADILVRCLAEEGVEHVFGYPGGAVLYIYDAIFKQDKFQHILVRHEQAAVHAADAYSR 65 ++ A V + +EG++ FG PG A+ Y A+ KQ +HIL RH + A H A+ Y+R Sbjct: 4 MTAAQAAVWVMQKEGIDQAFGVPGAAINPFYSAMQKQGTIKHILARHVEGATHMAEGYTR 63 Query: 66 S-SQKVGVAIVTSGPGVTNAVTGLATAYMDSIPMVVISGQVPSTAIGQDAFQECDTVGIT 124 + + +GVA+ TSGPG T+ +TGL +A DSIP++ ++GQ P + ++ FQ D I+ Sbjct: 64 AKAGNIGVALATSGPGGTDMITGLYSAIADSIPILCVTGQAPRARLHKEDFQAVDIESIS 123 Query: 125 RPCVKHNFLVKDVKDLAETVKKAFFIATTGRPGPVLVDIPKDITMHTCAYEYPKAVEMRS 184 +P K + +V++ + + ++AF I +GRPGPVL+D+P D+ + ++ + Sbjct: 124 KPVTKWSVMVREPALVPQVFQQAFHIMRSGRPGPVLIDLPFDVQVAEIEFDPDLYEPLPV 183 Query: 185 YKPVDKGHSGQIRKALQLLLTAERPMIYTGGGIILANAAPELNKLVDRLGYPCTNTLMGL 244 YKP QI +A+ +L AERP++ +GGG+I ++A+ + + + + P TLMG Sbjct: 184 YKPA--ASRKQIERAISMLNEAERPLLISGGGVINSDASALMQEFAELVNVPVVPTLMGW 241 Query: 245 GAYRSSSDKFVGMPGMHGTFE-ANMAMQHCDVLIAIGARFDDRVIGNPKHFASHARKIIH 303 G VGM G+ + N M D IG R+ +R G+ F + RK +H Sbjct: 242 GTVPDDHPLMVGMVGLQTSHRYGNATMLASDFAFGIGNRWANRFTGSIDVF-TKDRKFVH 300 Query: 304 IDIDPSSISKRVKVDIPIVGNVKDVLQ---ELLAQLDSAETRQNGAALDAWWKQINEWRK 360 IDI+P+ I + D+ I + L+ E+ +L +A +N DAW + E RK Sbjct: 301 IDIEPTQIGRVFGPDLGITSDAGAALKLMIEVAKELKAAGKLKN---RDAWLAECQE-RK 356 Query: 361 RDCLKFATSD-EFIKPQSVVQKVWEVTKGDAFITSDVGQHQMWAAQYYGFDKPRRWINSG 419 R L+ D IKPQ V Q++ EV A S++G Q+ A Q+ K R WIN G Sbjct: 357 RTMLRKTDFDVTPIKPQRVYQEMNEVFGKTARYVSNIGLSQIAAGQFLHVYKERNWINCG 416 Query: 420 GLGTMGVGLPYAMGVQMANPDATVACITGEASIQMCIQELATCKQYHLTPKIILLNNRFL 479 G +G +P A+GV+ A+P + + ITG+ Q I+ELA Q++L +L+NN +L Sbjct: 417 QAGPLGWSVPAALGVRAADPTSEIVAITGDYDFQFLIEELAAGAQFNLPYIHVLVNNSYL 476 Query: 480 GMVRQWQQ---IDYGSRYSESYMDSLP------DFNKLAESYGHVGMKIEKPGDVDGALR 530 G++RQ Q+ +DY + ++S D K+ E +G +++ P D+ ALR Sbjct: 477 GLIRQAQRMFTMDYCVSLAFDNINSTENASYGVDHVKVTEGFGCKAIRVYNPDDIQPALR 536 Query: 531 EA 532 +A Sbjct: 537 KA 538 >gi|134093631|ref|YP_001098706.1| putative oxalyl-CoA decarboxylase [Herminiimonas arsenicoxydans] Length = 570 Score = 150 bits (380), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 134/546 (24%), Positives = 245/546 (44%), Gaps = 40/546 (7%) Query: 4 EHLSGADILVRCLAEEGVEHVFGYPGGAVLYIYDAIFKQDKFQHILVRHEQAAVHAADAY 63 E G +L+ L G+ +++G G V I +++ + R+EQ A +AA Sbjct: 13 ELTDGFHLLMEALEMNGITNIYGLLGIPVTEI-GRMWQARGNKFFSFRNEQNAGYAASVA 71 Query: 64 SRSSQKVGVAIVTSGPGVTNAVTGLATAYMDSIPMVVISGQVPSTAIG--QDAFQECDTV 121 ++K G+ + S PG N +T LA A + PM++ISG + Q ++E D + Sbjct: 72 GYLTKKPGICVTVSAPGFLNGLTALANATTNCFPMILISGSSEREVVDLQQGDYEEMDQL 131 Query: 122 GITRPCVKHNFLVKDVKDLAETVKKAFFIATTGRPGPVLVDIPKDITMHTCAYEYPKAVE 181 I RP K +F + +D+ V +A A +GRPG V +DIP + T + E K Sbjct: 132 NIARPHCKASFRINRTEDIGVAVVRAIRTALSGRPGGVYLDIPARLFSTTMSAEEGKK-- 189 Query: 182 MRSYKPVDKGHS-----GQIRKALQLLLTAERPMIYTGGGIILANAAPELNKLVDRLGYP 236 + PVD + + +A+ L+ A++P+I G G A ++ L++ G P Sbjct: 190 -SLFVPVDPAPAQIPGPDAVARAVALIKGAKKPLILLGKGAAYAQCDADIKALIEETGIP 248 Query: 237 CTNTLMGLGAYRSSSDKFVGMPGMHGTFEA---NMAMQHCDVLIAIGARFDDRVIGNPKH 293 T M G SD +H A +M +Q DV++ IGAR + + Sbjct: 249 FTPMSMAKGLV---SD-------IHPQCAAAARSMVLQESDVVVLIGARLNWLLAHGKGK 298 Query: 294 FASHARKIIHIDIDPSSISKRVKVDIPIVGNVKDVLQELLAQLDSAETRQNGAALDAWWK 353 A+K + IDI + + V + P+VG+V+ + L A L +DA + Sbjct: 299 TWGGAKKFVQIDIQANEMDSNVPIAAPLVGDVESCVNALRAGLKGMTKPTE--WMDAIAE 356 Query: 354 QINEWRKRDCLKFATSDEFIKPQSVVQKVWEVTKGDAFIT------SDVGQHQMWAAQYY 407 + + + + K AT+ + + + + +V K +T + + +M QY Sbjct: 357 RASGSKAKLGTKLATATPIMNYFNSLGAIRDVLKNHQDVTLVNEGANALDNARMIIDQY- 415 Query: 408 GFDKPRRWINSGGLGTMGVGLPYAMGVQMANPDATVACITGEASIQMCIQELATCKQYHL 467 +PR+ +++G G MGVG+ A+ + VA + G+++ E+ T +Y+L Sbjct: 416 ---QPRKRVDTGTWGVMGVGMGSAVAAAVETGKPVVA-VCGDSAFGFSGMEIETITRYNL 471 Query: 468 TPKIILLNNRFLGMVRQWQQIDYGSRYSESYMDSLPDFNKLAESYGHVGMKIEKPGDVDG 527 +I++NN G + + + + + S + ++ L +S G G+++ P ++ Sbjct: 472 PVTVIIMNN---GGIYRGDEANPAHQVSCMTFNPNTRYDLLMQSVGGEGVRVNTPEELTK 528 Query: 528 ALREAF 533 AL + Sbjct: 529 ALEASL 534 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.136 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,111,914 Number of extensions: 46379 Number of successful extensions: 140 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 130 Number of HSP's successfully gapped: 3 Length of query: 572 Length of database: 1,000,347 Length adjustment: 87 Effective length of query: 485 Effective length of database: 713,682 Effective search space: 346135770 Effective search space used: 346135770 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)