BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1591.p
         (135 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094463|ref|YP_001099538.1| hypothetical protein HEAR1235 [...    99   7e-23

>gi|134094463|ref|YP_001099538.1| hypothetical protein HEAR1235
           [Herminiimonas arsenicoxydans]
          Length = 134

 Score = 99.0 bits (245), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 56/133 (42%), Positives = 85/133 (63%), Gaps = 3/133 (2%)

Query: 1   MNNKEMQFAYKVKLALDANLDTLSDDTLQSLAAARRVALARKK-QAPLHVQVKQPVLAGA 59
           M  KE+  AYK++ ALD + + L  +  + LA+AR +AL+ KK ++   V V++  LAG 
Sbjct: 1   MKTKELDLAYKLRHALDESSNNLPPNICERLASARNIALSHKKAESTASVVVQRTALAGH 60

Query: 60  LGGTMMSPEKPSWWSRLGVAAPLLAGIILFAGIYQHENAKRVSYLADIDAAVLSDELPLS 119
              +  +  + SW +R+G+A PL   +    GIYQ E  +++   A IDAAVL+D+LP+S
Sbjct: 61  PAPS--THNRFSWIARMGMAVPLAVLVFGLIGIYQFEQRQQIIESAAIDAAVLTDDLPIS 118

Query: 120 AYLDHGFNAYLAE 132
           AYLD GFNA+LA+
Sbjct: 119 AYLDSGFNAFLAK 131


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.132    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 216,606
Number of extensions: 7733
Number of successful extensions: 31
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 1
Length of query: 135
Length of database: 1,000,347
Length adjustment: 72
Effective length of query: 63
Effective length of database: 763,107
Effective search space: 48075741
Effective search space used: 48075741
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 124 (52.4 bits)