BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1586.p
         (281 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095368|ref|YP_001100443.1| hypothetical protein HEAR2184 [...   329   1e-91

>gi|134095368|ref|YP_001100443.1| hypothetical protein HEAR2184
           [Herminiimonas arsenicoxydans]
          Length = 279

 Score =  329 bits (843), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 170/270 (62%), Positives = 204/270 (75%), Gaps = 3/270 (1%)

Query: 4   VSSPDEVFSFTGLRSGALSCLKETSPDAKCTFVRALRAAWQAGDLPLESADLAASEAGNG 63
           +S P +V     LR  AL     + P  K   V A+  AW+A  L L++  L    A   
Sbjct: 5   ISHP-QVTDIPELRLLALHWAGASDPACKADGVIAMADAWRAQTLRLDT--LGVLLAQQA 61

Query: 64  IPGRPAQPELVPPLQVKHRSMGTPEGRAALIHALAHIEFNAINLALDAVWRFAGMPRDFY 123
           IPGRPA PEL+ P  VKHRSM T EGRAA+IHAL HIEFNAINLALDAVWRFAGMP  +Y
Sbjct: 62  IPGRPAVPELISPKFVKHRSMRTVEGRAAMIHALTHIEFNAINLALDAVWRFAGMPAAYY 121

Query: 124 ADWLQVADEEAYHFRLLADHLKTLGHAYGDFTAHNALWDMAESTKGDVLARIALVPRTLE 183
           ADWLQVA EEA HF LL+ HL+TLG+ YGDF AHN++W+MAE T+ D+LAR+ALVPRTLE
Sbjct: 122 ADWLQVAAEEALHFSLLSAHLQTLGYQYGDFPAHNSMWEMAEKTRDDILARMALVPRTLE 181

Query: 184 ARGLDAAPPVRAKLAQAGDVAAAEILDIIMRDEVGHVLIGNRWFHWLCEQRQLEPVVTFA 243
           ARGLDA P  RAKLAQAGD AAAEILDII+RDE+GHV IGNRW++ LC    L+P++T+A
Sbjct: 182 ARGLDATPLTRAKLAQAGDQAAAEILDIILRDEIGHVAIGNRWYNMLCHLHGLDPILTYA 241

Query: 244 ELCQRHRAPPLRGPFNLEARRAAGFSDEEM 273
           EL  +++AP LRGPFN++ARRAAGFS+ E+
Sbjct: 242 ELSLQYKAPVLRGPFNMQARRAAGFSELEL 271


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.136    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 575,453
Number of extensions: 23988
Number of successful extensions: 60
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 200
Effective length of database: 733,452
Effective search space: 146690400
Effective search space used: 146690400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)