BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1581.p
         (275 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095349|ref|YP_001100424.1| putative tRNA/rRNA methyltransf...   366   e-103

>gi|134095349|ref|YP_001100424.1| putative tRNA/rRNA
           methyltransferase [Herminiimonas arsenicoxydans]
          Length = 248

 Score =  366 bits (940), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 179/248 (72%), Positives = 210/248 (84%), Gaps = 9/248 (3%)

Query: 10  LFSRLRFVLVNTSSPGNIGSAARAIKTMGFSELVLVNPRFPDAVKEDEAIAFASGAIDVL 69
           LF+RLRFVLV TS PGNIG+AARAIK MGFSELVLVNPRFPDA  ++EAIAFASGA D+L
Sbjct: 3   LFNRLRFVLVETSRPGNIGAAARAIKNMGFSELVLVNPRFPDAAMQEEAIAFASGAQDIL 62

Query: 70  ENARIVGSVEEALQGCNFAAAVSARLREFSPPVVSPRELAGQLSRDTGLNAALLFGNERF 129
            +ARIVGS+EEAL  CN+AAAV+ARLREFSPPV++PRELA +L+ + GL AA++FGNERF
Sbjct: 63  ASARIVGSIEEALADCNYAAAVTARLREFSPPVITPRELATRLADEAGLQAAVIFGNERF 122

Query: 130 GLPNEVVQKCNALLNIPANPEYSSLNLSQAVQVLAYECRMTELEVQGGPMQTSGDARAPG 189
           GLPNE+V+KCN L+NIPANP+YSSLNL+QAVQVLAYE RM    +   P   S       
Sbjct: 123 GLPNEIVEKCNVLINIPANPDYSSLNLAQAVQVLAYEARMA--AIVDAPSAVSN------ 174

Query: 190 EVGFHGQSASVGEIEGMFAHLEQALVAIDFLNPDNPKKLMPRLKRMFSRAQLETEEVNIL 249
            +GF G++A + +IEGM+AHLEQALVAIDFL+ DNPKKLMPRLKR+FSR QLETEEVNIL
Sbjct: 175 -IGFQGEAAGMAQIEGMYAHLEQALVAIDFLDADNPKKLMPRLKRLFSRTQLETEEVNIL 233

Query: 250 RGIARQIL 257
           RGIA+QIL
Sbjct: 234 RGIAKQIL 241


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.315    0.132    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 493,496
Number of extensions: 19547
Number of successful extensions: 68
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 195
Effective length of database: 736,747
Effective search space: 143665665
Effective search space used: 143665665
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)