BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1574.p
         (297 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093821|ref|YP_001098896.1| putative LysR-type regulator [H...    71   7e-14
gi|134093718|ref|YP_001098793.1| LysR family transcriptional reg...    59   3e-10

>gi|134093821|ref|YP_001098896.1| putative LysR-type regulator
           [Herminiimonas arsenicoxydans]
          Length = 289

 Score = 70.9 bits (172), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 114/268 (42%), Gaps = 28/268 (10%)

Query: 13  IRVFLAVVDSHGVSAAQARLNVGQSTISTQLNTLEMRLGFRLCERGRAGFKLTAKGEKFA 72
           +RVF+AV+D    S A   L+  QS IS  +  LE +L   L +R +    LT  G+   
Sbjct: 1   MRVFVAVIDYGSFSKAARELHRTQSVISYTIANLEAQLNVALFDRSKRKPTLTEAGKALL 60

Query: 73  DSARRMMDALTEFGMEARNLDKRLVGKLSIGLMGHTPAQHNARLAQVIRAFRQRDEAVRI 132
             AR +   +      A+ L + L  ++SI +    P   N RL   ++AF+QR   V +
Sbjct: 61  ADARTVGLKVDAMRARAKTLAQGLEAEVSIAVDVMFP---NCRLVAALQAFQQRFPTVAL 117

Query: 133 ELLVRTPGELEEMLLNGNIQIAI-GYFWRHVSALQYAPLLQERQVAYCAPPHPLFEQPGE 191
            L +   G +  ++     QI I G         Q  P      +   AP HPL +  G 
Sbjct: 118 RLRIEALGAVMHLVGQRTCQIGIAGPMLDFADTFQSQPAGSITMLPVAAPSHPLAQMEGI 177

Query: 192 IDPEQAVQYAWAWRDYPVPPEHLPLQPRN---------IMAV----TGNMEAMSLLILSG 238
           I  E A       RDY      L L  R+         ++AV     G++ A  +L+ +G
Sbjct: 178 IPTEIA-------RDY----TQLVLTDRSELTAGQNFGVVAVRDWRLGDLGAKHMLLRNG 226

Query: 239 QHLGYLPEEMGRDYEARGQMRALNRERL 266
              G +PEEM R+    G++  L  E L
Sbjct: 227 LGWGSMPEEMIREDLDTGRLVQLKLEHL 254


>gi|134093718|ref|YP_001098793.1| LysR family transcriptional
           regulator [Herminiimonas arsenicoxydans]
          Length = 287

 Score = 58.9 bits (141), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 86/182 (47%), Gaps = 12/182 (6%)

Query: 8   LDLRLIRVFLAVVDSHGVSAAQARLNVGQSTISTQLNTLEMRLGFRLCERGRAGFKLTAK 67
           +D+ L R FL +V S    AA  RL+V Q+T++ ++  LE +LG  L  R RAG +LT  
Sbjct: 1   MDIELARTFLYIVRSGSFIAAATRLHVTQTTVTARVQNLESQLGCSLFVRNRAGARLTDD 60

Query: 68  GEKFADSARRMMDALTEFGMEARNLDKRLVGKLSIGL-MGHTPAQHNARLAQVIRAFRQR 126
           GE+F   A +++        +A   D  L       L +G   +  N  + Q     R+ 
Sbjct: 61  GERFVRYASQLVQT-----WDAARRDLPLPDGYGDSLALGSEVSLCNPLMLQWTMQLRRA 115

Query: 127 --DEAVRIELLVRTPGELEEMLLNGNIQIAIGYFWRHVSALQYAPLLQER--QVAYCAPP 182
               A+R+E  V     L+  L +G +  A+ Y   + + +Q   LL+E+  Q+A    P
Sbjct: 116 LPSHAIRVE--VGDGSSLQSKLEHGLLDAALVYRPVYWTGMQVEQLLEEKLVQIASTKNP 173

Query: 183 HP 184
            P
Sbjct: 174 EP 175


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.137    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 538,128
Number of extensions: 21048
Number of successful extensions: 94
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 3
Length of query: 297
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 216
Effective length of database: 733,452
Effective search space: 158425632
Effective search space used: 158425632
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)