BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1573.p (377 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC trans... 162 3e-41 gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 160 8e-41 gi|134094055|ref|YP_001099130.1| ABC transporter ATP-binding pro... 143 1e-35 gi|134093702|ref|YP_001098777.1| nitrate ABC transporter ATP-bin... 132 2e-32 gi|134094842|ref|YP_001099917.1| ABC transporter ATP-binding pro... 126 2e-30 >gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC transporter ATP-binding subunit [Herminiimonas arsenicoxydans] Length = 366 Score = 162 bits (409), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 89/242 (36%), Positives = 135/242 (55%), Gaps = 9/242 (3%) Query: 1 MIELDQLSKTYTQKDGTQVKAVDAVSLKVAEGEICVFLGPSGCGKTTTLKMINRLINPTS 60 ++E+ L++ + D T VD +SL + GE LGPSGCGKTT L+MI P + Sbjct: 3 LLEIRNLTRRF--GDNT---VVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDEPDA 57 Query: 61 GRVLLNGQDTSGIDEVELRRHIGYVIQQIGLFPNMTIEENITIVPRLLGWDKKRCQERAT 120 G++LL+G D +G+ + R + V Q LFP+MT+ NI + K +++ Sbjct: 58 GKILLDGVDLTGVPPEQ--RVVRTVFQNYALFPHMTVAGNIAFPLEMANTPKSEIKQKVD 115 Query: 121 ELMAMVALDPKKFLKRYPRELSGGQQQRIGVIRALAADAPVLLMDEPFGAVDPINRESIQ 180 E + V L F RYP ELSGGQ+QR+ + RAL +LL+DEP A+D RE +Q Sbjct: 116 EALEDVRL--TGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQ 173 Query: 181 NEFFQMQRQLNKTVIMVSHDIDEAIKLGDKVAVFRAGKLVQFDNPDTLLARPKDDFVSAF 240 E +Q+++ T + V+HD EA+ L ++AV G + Q D P + + P+ FV+ F Sbjct: 174 IELINLQKEVGITFVYVTHDQAEALALSHRIAVMNKGNIEQLDEPTRIYSYPRSRFVADF 233 Query: 241 VG 242 +G Sbjct: 234 IG 235 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 160 bits (406), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 93/238 (39%), Positives = 138/238 (57%), Gaps = 9/238 (3%) Query: 9 KTYTQKDGTQVKAVDAVSLKVAEGEICVFLGPSGCGKTTTLKMINRLINPTSGRVLLNGQ 68 K +K G V A++ VSL+ GE+ LGPSGCGKTT L++I L P G+VLL+G+ Sbjct: 6 KNINKKFGNFV-ALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLLDGE 64 Query: 69 DTSGIDEVELRRHIGYVIQQIGLFPNMTIEENIT----IVPRLLGWDKKRCQERATELMA 124 D S E R +G+V Q LF +MT+ ENI + P + +E+ T+L+ Sbjct: 65 DASARHVRE--RQVGFVFQHYALFKHMTVFENIAFGLRVRPAATRPSESVIKEKVTKLLE 122 Query: 125 MVALDPKKFLKRYPRELSGGQQQRIGVIRALAADAPVLLMDEPFGAVDPINRESIQNEFF 184 +V LD RYP +LSGGQ+QRI + RALA + VLL+DEPFGA+D R+ ++ Sbjct: 123 LVQLD--WLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLR 180 Query: 185 QMQRQLNKTVIMVSHDIDEAIKLGDKVAVFRAGKLVQFDNPDTLLARPKDDFVSAFVG 242 ++ +L+ T I V+HD +EA+++ D++ + G + Q P + P FV F+G Sbjct: 181 RLHDELHVTSIFVTHDQEEALEVADQIVLMNKGHVEQIGAPKDVYNNPASPFVYGFLG 238 >gi|134094055|ref|YP_001099130.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 376 Score = 143 bits (361), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 80/223 (35%), Positives = 125/223 (56%), Gaps = 6/223 (2%) Query: 22 VDAVSLKVAEGEICVFLGPSGCGKTTTLKMINRLINPTSGRVLLNGQDTSG--IDEVELR 79 V ++S + G+I LG SGCGKTT L+ I T G + L G++ S Sbjct: 34 VHSLSFALQRGQIGCLLGQSGCGKTTVLRAIAGFEPLTEGSITLGGKEISNAHFTATPET 93 Query: 80 RHIGYVIQQIGLFPNMTIEENITIVPRLLGWDKKRCQERATELMAMVALDPKKFLKRYPR 139 R IG V Q LFP++++ +N+ R L ++ Q R L+ +V L + K++P Sbjct: 94 RQIGVVFQDYALFPHLSVADNVGFGLRKLAAPER--QARIAALLTLVGLASQG--KKFPH 149 Query: 140 ELSGGQQQRIGVIRALAADAPVLLMDEPFGAVDPINRESIQNEFFQMQRQLNKTVIMVSH 199 ELSGGQQQR+ + RALA +LL+DEPF +D RE + +E + +++ T ++V+H Sbjct: 150 ELSGGQQQRVALARALAPQPDLLLLDEPFSNLDVDLRERLASEVRDILKEVGTTAVLVTH 209 Query: 200 DIDEAIKLGDKVAVFRAGKLVQFDNPDTLLARPKDDFVSAFVG 242 D EA + D++ V + G +VQ+D+ L RP + FV+ F+G Sbjct: 210 DQHEAFAIADQIGVMQDGVIVQWDSAYNLYHRPANRFVADFIG 252 >gi|134093702|ref|YP_001098777.1| nitrate ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 271 Score = 132 bits (333), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 74/218 (33%), Positives = 118/218 (54%), Gaps = 7/218 (3%) Query: 1 MIELDQLSKTYTQKDGTQVKAVDAVSLKVAEGEICVFLGPSGCGKTTTLKMINRLINPTS 60 I++ ++ K G A+ ++L VA+GE +G SGCGK+T L +I L T Sbjct: 8 FIDIQHAEMSFHTKKGV-FNALTDINLTVAKGEFITLIGHSGCGKSTLLNLIAGLTQSTG 66 Query: 61 GRVLLNGQDTSGIDEVELRRHIGYVIQQIGLFPNMTIEENITI-VPRLLGWDKKRCQERA 119 G +L ++ +G V Q L P +T EN+ + V R+ G + + + RA Sbjct: 67 GMLLCGNREIAGPSPER-----AVVFQNHSLLPWLTCYENVYLAVERVFGKVEGKAKLRA 121 Query: 120 TELMAMVALDPKKFLKRYPRELSGGQQQRIGVIRALAADAPVLLMDEPFGAVDPINRESI 179 A+ + ++ P E+SGG +QR+G+ RAL+ + VLLMDEPFGA+D + R + Sbjct: 122 RTRAALSLVGLTHAEQKRPNEISGGMKQRVGIARALSMEPKVLLMDEPFGALDALTRAHL 181 Query: 180 QNEFFQMQRQLNKTVIMVSHDIDEAIKLGDKVAVFRAG 217 Q+E ++ TV+MV+HD+DEA+ L DK+ + G Sbjct: 182 QDELLKIVAATGSTVVMVTHDVDEAVLLSDKIVMLTNG 219 >gi|134094842|ref|YP_001099917.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 434 Score = 126 bits (317), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 122/223 (54%), Gaps = 18/223 (8%) Query: 1 MIELDQLSKTYTQKDGTQVKAVDAVSLKVAEGEICVFLGPSGCGKTTTLKMINRLINPTS 60 +IEL ++K++ DGT ++ V+ +AEGEI LG SG GK+T L+++ LI Sbjct: 6 LIELKGVAKSFKTADGTPCSVLENVNFALAEGEIVALLGKSGSGKSTLLRIMAGLIAADQ 65 Query: 61 GRVLLNGQD----TSGIDEVELRRHIGYVIQQIGLFPNMTIEENITIVPRLLGWDKKRCQ 116 G GQ+ SGI V Q LFP +T+++N+ + G + Sbjct: 66 GTAKYRGQEIYSPVSGI---------AMVFQSFALFPWLTVQQNVELGLEAQGMAPDERE 116 Query: 117 ERATELMAMVALDPKKFLKRYPRELSGGQQQRIGVIRALAADAPVLLMDEPFGAVDPINR 176 +RA ++ ++ L F PRELSGG +QR+G+ R L VLLMDE F A+D + Sbjct: 117 KRADAMLDLIGL--AGFGGALPRELSGGMKQRVGIARGLVTGPDVLLMDEAFSALDVLTG 174 Query: 177 ESIQNEFFQM---QRQLNKTVIMVSHDIDEAIKLGDKVAVFRA 216 E+++++ +M +R K +++VSH+I+EA+ + D++ V + Sbjct: 175 ETLRDDILEMWEEKRIPTKGILIVSHNIEEAVMMADRILVLSS 217 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.319 0.135 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 667,103 Number of extensions: 25938 Number of successful extensions: 247 Number of sequences better than 1.0e-08: 43 Number of HSP's gapped: 180 Number of HSP's successfully gapped: 45 Length of query: 377 Length of database: 1,000,347 Length adjustment: 83 Effective length of query: 294 Effective length of database: 726,862 Effective search space: 213697428 Effective search space used: 213697428 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)